Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04-
20] 761 sequences; 49,677,730 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq634 183 3e-41
seq412 159 4e-34
seq738 109 6e-19
seq11 109 6e-19
>seq634
Length=211807
Score = 183 bits (202), Expect = 3e-41
Identities = 553/848 (65%), Gaps = 17/848 (2%)
Strand=Plus/Plus
Query 80905 AGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTG 80964
|| || |||| ||||| ||||| ||||| || | | || |||| | ||| || |||
Sbjct 37122 AGCGAGGCCAAGTTGCAGACGGCAACCTCATCGGGTGCGGTGTACTCAATGATCTCGGTG 37181
Query 80965 CACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024
|| | ||||| ||| || || ||||| |||||||| ||| |||||| ||
Sbjct 37182 CAGAGGTTAGAGCTGCGAATAGTTCCGAGGTTCTTCTGGTTGCTTTTGCGGTTGCATGCA 37241
Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084
||||||||| ||| |||||| | || |||||| ||| | || ||||||||||| |||
Sbjct 37242 TCCTTGTAGAGCATATACGGGTTTCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCAG 37301
Query 81085 ATCTC----GCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA 81140
| || |||||| | | | | || || |||||| |||||||| ||
Sbjct 37302 AGCTTCTGGGCGCGCACAGTCTCTCGTCCGCGT----CCCTCGGCCTCATACTTGTGATA 37357
Query 81141 -AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA 81199
|||| | ||||||| | | || | | || | | | ||| ||||| ||||| |
Sbjct 37358 CAGCTCC-TCGAACTCGTCGCCATAGACGTCGGCCAACCCAGGGGCTTCGTTCGGGCAGA 37416
Query 81200 TCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGG 81259
|| ||| || | | || || ||||||||| |||||| ||||| || |
Sbjct 37417 AAAGAGTCCACTCTCCATTATCCTGGACCCGCTTCATGAAGAGGTCAGGAATCCACAGAG 37476
Query 81260 CGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAA 81319
|| ||||| || ||| ||| ||| || | || ||||| ||| | || || |
Sbjct 37477 CGTAGAACAAATCACGGGCGCGGATCTCTTCCTTGCCATGGTTCTTGCGAAGATCAAGGA 37536
Query 81320 AGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---AC 81376
|| | | || || || ||||||||||| || || | ||||| | || ||| |
Sbjct 37537 AGCCAAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGGCGCTTAT 37596
Query 81377 GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATAC 81436
||||||||||| ||| ||||| || || |||| | ||||| | ||||||||||| |
Sbjct 37597 TGCCACCCTGGTCGACATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGC 37656
Query 81437 CATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGAT 81494
| | ||| |||||||| || |||| || || |||| || | | || ||
Sbjct 37657 CGTTGGACGTTCCGTTCGTTCCACCGATGTATGAGCCGGTGGCACGGATGCGATGAACAT 37716
Query 81495 TGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATA 81554
|| ||||| || || || | ||| || ||| ||| ||| |||| || || ||
Sbjct 37717 TG--AGACCAATACCGCCAGCGGTCTTGGAGATCATAGCGCACGTCTTCAGCGTGTCGTA 37774
Query 81555 AATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCT 81614
|| || |||||||| || | || || || | | ||| ||| |||||||| ||| |
Sbjct 37775 GATGCCTTCGATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGGGTT 37834
Query 81615 TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAG 81674
|| ||||| ||||| || ||||| | |||||| |||| || ||| |||||
Sbjct 37835 GGGTGTTCCGGCGTTGAAAAGCGTTGGAGACGCGTGTGTGAAGTATTTGTTGGACATGTA 37894
Query 81675 GTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCAT 81734
|| || || || || | || || || ||||| || || | |||||||||||
Sbjct 37895 GTTGTATGTCTCGATGGCCTTCTCGATGTCTTCGCCGTGGATGCCAACGGCTACACGCAT 37954
Query 81735 AAACATGT 81742
| |||||
Sbjct 37955 GAGCATGT 37962
>seq412
Length=249799
Score = 159 bits (176), Expect = 4e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| |||||||| || |||||||||||||| || || ||||| |||||
Sbjct 4527 AATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTC 4468
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||| | || | || | ||||||||||| |||||||| ||||| || || ||
Sbjct 4467 CGATACCATCGACAACGTCAAATCAAAAATTCAGGATAAGGAGGGCATTCCCCCGGATCA 4408
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||||||| || || || || ||||| || || |||| || ||||| | ||||| ||
Sbjct 4407 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAA 4348
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || ||||| || || | || ||||||| || |||||
Sbjct 4347 CATCCAGAAAGAGTCCACCCTCCACTTGGTTCTGCGTCTGCGAGGTGG 4300
Score = 145 bits (160), Expect = 9e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||||||||| || || || |||||||||||
Sbjct 4298 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACGATCACGCTAGAGGTTGAGTCGTCC 4239
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || ||||| | || || ||||| || ||||| ||||| || ||||||
Sbjct 4238 GACACAATCGACAACGTGAAGTCCAAGATCCAGGATAAAGAGGGTATTCCCCCGGACCAG 4179
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || |||||||||||||| | ||||| | || || || | ||||| ||
Sbjct 4178 CAACGTCTCATCTTTGCTGGTAAGCAGTTGGAGGACGGCCGAACGCTCTCGGACTACAAC 4119
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| || ||||| || | || | ||||| || || || ||
Sbjct 4118 ATCCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTCCGTGGCGGTCA 4069
Score = 132 bits (146), Expect = 5e-26
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || | ||||| ||||| || | |||| ||| | ||| |
Sbjct 5013 ACCGGCAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACGATTGACAATGTCAAGTCG 4954
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || ||||| ||||| || || || || ||||| ||||| | ||||| || || |||
Sbjct 4953 AAGATCCAGGATAAGGAAGGCATCCCGCCTGACCAACAGCGCTTGATTTTCGCAGGCAAG 4894
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| |||||||||| ||||| || | ||||| || |||| ||||| || ||||| |||
Sbjct 4893 CAGCTCGAGGATGGACGTACTCTGTCCGACTACAACATCCAGAAGGAGTCAACTCTGCAT 4834
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | ||||| ||||||||
Sbjct 4833 CTCGTCCTTCGTCTCCGCGGTGG 4811
>seq738
Length=174967
Score = 109 bits (120), Expect = 6e-19
Identities = 117/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || ||||||||||||||||| ||||| || ||||| |||||| | ||
Sbjct 25383 AATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATC 25324
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| || || ||||| |||||||||| || ||||| | ||||| || |||| |||||
Sbjct 25323 TTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAG 25264
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||||| || | || | ||||| || || ||
Sbjct 25263 TCGACTCTGCACTTGGTGCTCCGTCTCCGTGGCGG 25229
>seq11
Length=137347
Score = 109 bits (120), Expect = 6e-19
Identities = 105/135 (78%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
||||||||||| ||||| |||||||| |||||||| || || || || ||||| |||||
Sbjct 124847 GACAAGGAGGGCATTCCCCCAGACCAACAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAA 124788
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|| | || ||||| | ||||| || |||| ||||| || || ||||| || ||| |
Sbjct 124787 GACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGTCCTC 124728
Query 27619 CGTCTTCGCGGTGGA 27633
||||| || ||||||
Sbjct 124727 CGTCTGCGTGGTGGA 124713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570304974922320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |