Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq634 183 3e-41 seq412 159 4e-34 seq738 109 6e-19 seq11 109 6e-19 >seq634 Length=211807 Score = 183 bits (202), Expect = 3e-41 Identities = 553/848 (65%), Gaps = 17/848 (2%) Strand=Plus/Plus Query 80905 AGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTG 80964 || || |||| ||||| ||||| ||||| || | | || |||| | ||| || ||| Sbjct 37122 AGCGAGGCCAAGTTGCAGACGGCAACCTCATCGGGTGCGGTGTACTCAATGATCTCGGTG 37181 Query 80965 CACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024 || | ||||| ||| || || ||||| |||||||| ||| |||||| || Sbjct 37182 CAGAGGTTAGAGCTGCGAATAGTTCCGAGGTTCTTCTGGTTGCTTTTGCGGTTGCATGCA 37241 Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084 ||||||||| ||| |||||| | || |||||| ||| | || ||||||||||| ||| Sbjct 37242 TCCTTGTAGAGCATATACGGGTTTCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCAG 37301 Query 81085 ATCTC----GCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA 81140 | || |||||| | | | | || || |||||| |||||||| || Sbjct 37302 AGCTTCTGGGCGCGCACAGTCTCTCGTCCGCGT----CCCTCGGCCTCATACTTGTGATA 37357 Query 81141 -AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA 81199 |||| | ||||||| | | || | | || | | | ||| ||||| ||||| | Sbjct 37358 CAGCTCC-TCGAACTCGTCGCCATAGACGTCGGCCAACCCAGGGGCTTCGTTCGGGCAGA 37416 Query 81200 TCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGG 81259 || ||| || | | || || ||||||||| |||||| ||||| || | Sbjct 37417 AAAGAGTCCACTCTCCATTATCCTGGACCCGCTTCATGAAGAGGTCAGGAATCCACAGAG 37476 Query 81260 CGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAA 81319 || ||||| || ||| ||| ||| || | || ||||| ||| | || || | Sbjct 37477 CGTAGAACAAATCACGGGCGCGGATCTCTTCCTTGCCATGGTTCTTGCGAAGATCAAGGA 37536 Query 81320 AGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---AC 81376 || | | || || || ||||||||||| || || | ||||| | || ||| | Sbjct 37537 AGCCAAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGGCGCTTAT 37596 Query 81377 GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATAC 81436 ||||||||||| ||| ||||| || || |||| | ||||| | ||||||||||| | Sbjct 37597 TGCCACCCTGGTCGACATAACGAGCGGTGTTGTTATAGACACGAAGCATAGGGATGAGGC 37656 Query 81437 CATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGAT 81494 | | ||| |||||||| || |||| || || |||| || | | || || Sbjct 37657 CGTTGGACGTTCCGTTCGTTCCACCGATGTATGAGCCGGTGGCACGGATGCGATGAACAT 37716 Query 81495 TGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATA 81554 || ||||| || || || | ||| || ||| ||| ||| |||| || || || Sbjct 37717 TG--AGACCAATACCGCCAGCGGTCTTGGAGATCATAGCGCACGTCTTCAGCGTGTCGTA 37774 Query 81555 AATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCT 81614 || || |||||||| || | || || || | | ||| ||| |||||||| ||| | Sbjct 37775 GATGCCTTCGATGCTGTCATCCTTGATATCGATGAGGAAGCAGGAGGACATCTGTGGGTT 37834 Query 81615 TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAG 81674 || ||||| ||||| || ||||| | |||||| |||| || ||| ||||| Sbjct 37835 GGGTGTTCCGGCGTTGAAAAGCGTTGGAGACGCGTGTGTGAAGTATTTGTTGGACATGTA 37894 Query 81675 GTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCAT 81734 || || || || || | || || || ||||| || || | ||||||||||| Sbjct 37895 GTTGTATGTCTCGATGGCCTTCTCGATGTCTTCGCCGTGGATGCCAACGGCTACACGCAT 37954 Query 81735 AAACATGT 81742 | ||||| Sbjct 37955 GAGCATGT 37962 >seq412 Length=249799 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || |||||||||||||| || || ||||| ||||| Sbjct 4527 AATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTC 4468 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || | || | ||||||||||| |||||||| ||||| || || || Sbjct 4467 CGATACCATCGACAACGTCAAATCAAAAATTCAGGATAAGGAGGGCATTCCCCCGGATCA 4408 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| || || |||| || ||||| | ||||| || Sbjct 4407 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAA 4348 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || | || ||||||| || ||||| Sbjct 4347 CATCCAGAAAGAGTCCACCCTCCACTTGGTTCTGCGTCTGCGAGGTGG 4300 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||||||||| Sbjct 4298 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACGATCACGCTAGAGGTTGAGTCGTCC 4239 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| | || || ||||| || ||||| ||||| || |||||| Sbjct 4238 GACACAATCGACAACGTGAAGTCCAAGATCCAGGATAAAGAGGGTATTCCCCCGGACCAG 4179 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || |||||||||||||| | ||||| | || || || | ||||| || Sbjct 4178 CAACGTCTCATCTTTGCTGGTAAGCAGTTGGAGGACGGCCGAACGCTCTCGGACTACAAC 4119 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || ||||| || | || | ||||| || || || || Sbjct 4118 ATCCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTCCGTGGCGGTCA 4069 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || | ||||| ||||| || | |||| ||| | ||| | Sbjct 5013 ACCGGCAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACGATTGACAATGTCAAGTCG 4954 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||| ||||| || || || || ||||| ||||| | ||||| || || ||| Sbjct 4953 AAGATCCAGGATAAGGAAGGCATCCCGCCTGACCAACAGCGCTTGATTTTCGCAGGCAAG 4894 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| ||||| || | ||||| || |||| ||||| || ||||| ||| Sbjct 4893 CAGCTCGAGGATGGACGTACTCTGTCCGACTACAACATCCAGAAGGAGTCAACTCTGCAT 4834 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | ||||| |||||||| Sbjct 4833 CTCGTCCTTCGTCTCCGCGGTGG 4811 >seq738 Length=174967 Score = 109 bits (120), Expect = 6e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || ||||||||||||||||| ||||| || ||||| |||||| | || Sbjct 25383 AATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATC 25324 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| |||||||||| || ||||| | ||||| || |||| ||||| Sbjct 25323 TTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAG 25264 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || | || | ||||| || || || Sbjct 25263 TCGACTCTGCACTTGGTGCTCCGTCTCCGTGGCGG 25229 >seq11 Length=137347 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| |||||||| |||||||| || || || || ||||| ||||| Sbjct 124847 GACAAGGAGGGCATTCCCCCAGACCAACAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAA 124788 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | || ||||| | ||||| || |||| ||||| || || ||||| || ||| | Sbjct 124787 GACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGTCCTC 124728 Query 27619 CGTCTTCGCGGTGGA 27633 ||||| || |||||| Sbjct 124727 CGTCTGCGTGGTGGA 124713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570304974922320