Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq412 158 1e-33 seq738 93.3 4e-14 seq11 86.0 5e-12 >seq412 Length=249799 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| |||| || || || ||||| ||||| Sbjct 4526 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 4467 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| ||||||||| || || || ||||| || || ||||| Sbjct 4466 GATACCATCGACAACGTCAAATCAAAAATTCAGGATAAGGAGGGCATTCCCCCGGATCAG 4407 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | ||||| | ||| | ||||| |||||| Sbjct 4406 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAAC 4347 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | || |||||| ||||| |||| ||||| || Sbjct 4346 ATCCAGAAAGAGTCCACCCTCCACTTGGTTCTGCGTCTGCGAGGTGGTAT 4297 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||| ||| | ||||| ||||| || ||| || ||| | || || | |||||| Sbjct 4730 ACCGGTAAGACCATTACCCTTGAGGTCGAATCGAGCGATACCATCGACAACGTCAAATCG 4671 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || || || || ||||| || || || |||||||| || || | ||||||||| Sbjct 4670 AAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAACAGCGATTGATCTTCGCCGGCAAG 4611 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || || | ||| | ||||| ||||||||||| |||||||| || | ||| Sbjct 4610 CAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACGCTCCAT 4551 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || | ||| | || ||||| || Sbjct 4550 CTCGTCCTCCGTCTCCGTGGTGGAAT 4525 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || || || || || ||||| Sbjct 4298 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACGATCACGCTAGAGGTTGAGTCGTCC 4239 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || ||||| || || || || || || Sbjct 4238 GACACAATCGACAACGTGAAGTCCAAGATCCAGGATAAAGAGGGTATTCCCCCGGACCAG 4179 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || ||| | || | || || || || ||||| ||| | ||| || | || || ||||| Sbjct 4178 CAACGTCTCATCTTTGCTGGTAAGCAGTTGGAGGACGGC-CGAACGCTCTCGGACTACAA 4120 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || ||||||||||| | || ||||| | ||| | || || || Sbjct 4119 CATCCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTCCGTGGCGG 4072 >seq738 Length=174967 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||| ||||| || ||||| || || || ||||||||||| || | ||||||||| Sbjct 25371 AAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTCGCCGGCAAG 25312 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || || | ||| ||||||| |||||||| || ||||||||||| | || Sbjct 25311 CAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTGCAC 25252 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||| | || || || || Sbjct 25251 TTGGTGCTCCGTCTCCGTGGCGGTAT 25226 >seq11 Length=137347 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27080 AGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGA 27139 |||||| || ||||| || || || ||||||||| | || | |||||| || || | || Sbjct 124848 AGACAAGGAGGGCATTCCCCCAGACCAACAGCGTCTGATCTTCGCCGGAAAGCAGCTCGA 124789 Query 27140 AGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 |||| | ||| | ||||| |||||||| || |||||||||||| | || | || | Sbjct 124788 AGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGTCCT 124729 Query 27200 GCGTTTGCGGGGTGG 27214 ||| |||| ||||| Sbjct 124728 CCGTCTGCGTGGTGG 124714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434914262838720