Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq412 159 8e-34 seq738 109 1e-18 seq634 102 2e-16 >seq412 Length=249799 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||||||| |||||||| || || | ||||| | |||||| Sbjct 4315 AGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 4374 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || || || || |||| || ||||| ||| Sbjct 4375 TCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCC 4434 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || ||| ||| ||||| |||||||| || || || |||||||| ||||| ||| Sbjct 4435 TGAATTTTTGATTTGACGTTGTCGATGGTATCGGACGACTCCACCTCGAGGGTGATAGTC 4494 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||| || || | ||||||| Sbjct 4495 TTGCCGGTCAGGGTCTTGACGAAGATCTGCATT 4527 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| ||||| || |||||||| || |||| || || | || || Sbjct 4087 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTTCGGCCGTCC 4146 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || || ||||| || ||||| ||||| || |||| || || || ||| Sbjct 4147 TCCAACTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGGGGAATACCCTCTTTATCC 4206 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| || |||||||| || ||||||||| Sbjct 4207 TGGATCTTGGACTTCACGTTGTCGATTGTGTCGGACGACTCAACCTCTAGCGTGATCGTC 4266 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 4267 TTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 4298 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || ||||| ||||| || |||||||| || || | || || | |||||| Sbjct 4826 AGGACGAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCATCC 4885 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||||||||| || | ||| ||||||||||| || | |||||||| ||| Sbjct 4886 TCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGTTGGTCAGGCGGGATGCCTTCCTTATCC 4945 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || || ||||| ||| || ||||| | ||||| ||| Sbjct 4946 TGGATCTTCGACTTGACATTGTCAATCGTGTCCGAGGACTCCACCTCCAAGGTGATGGTC 5005 Query 211083 TTTCCCGTGA 211092 || || |||| Sbjct 5006 TTGCCGGTGA 5015 Score = 129 bits (142), Expect = 1e-24 Identities = 145/193 (75%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || |||||||| || || ||||| || || | ||||| | ||||| Sbjct 4543 AGGACGAGATGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCC 4602 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | || |||||||| || || | || ||||| ||| Sbjct 4603 TCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGGATGCCCTCCTTATCC 4662 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| ||| ||||| |||||||| || ||| ||| ||||| || || || Sbjct 4663 TGGATCTTCGATTTGACGTTGTCGATGGTATC---GCTCGATTCGACCTCAAGGGTAATG 4719 Query 211080 GTCTTTCCCGTGA 211092 ||||| || |||| Sbjct 4720 GTCTTACCGGTGA 4732 >seq738 Length=174967 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| ||||| || |||||||| || || | |||||| | ||||| Sbjct 25244 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 25303 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | || |||||||| || |||| || ||||||||| Sbjct 25304 TCGAGCTGCTTGCCGGCGAAGATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC 25363 Query 211023 TGGATCTT 211030 || ||||| Sbjct 25364 TGAATCTT 25371 >seq634 Length=211807 Score = 102 bits (112), Expect = 2e-16 Identities = 193/283 (68%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGG 178142 |||| | |||||| |||||||| || | |||| ||||| ||||| || | | Sbjct 37204 TTCCGAGGTTCTTCTGGTTGCTTTTGCGGTTGCAT---GCATCCTTGTAGAGCATATACG 37260 Query 178143 GCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAG 178202 | |||| ||| | || ||| |||| ||| | ||| |||| |||||| || |||| Sbjct 37261 GGTTTCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCAGAGCTTCTGGGCGCGCACAG 37320 Query 178203 TCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCAT 178262 ||| | | ||| || ||| ||||| | || ||||||||||| || |||| Sbjct 37321 TCTCTCGTCCGCGTCCCTCGGCCTCATACTTGTGATACAGCTCCTCGAACTCGTCGCCAT 37380 Query 178263 AGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCT 178322 |||| || | | || || || || || |||||||| ||| |||||| || | |||| Sbjct 37381 AGACGTCGGCCAACCCAGGGGCTTCGTTCGGGCAGAAAAGAGTCCACTCTCCATTATCCT 37440 Query 178323 TCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 || || |||||||||||||||| |||| | || ||||| Sbjct 37441 GGACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 37483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159140697905765