Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04-
20] 761 sequences; 49,677,730 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq412 159 8e-34
seq738 109 1e-18
seq634 102 2e-16
>seq412
Length=249799
Score = 159 bits (176), Expect = 8e-34
Identities = 163/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || ||||||||||| |||||||| || || | ||||| | ||||||
Sbjct 4315 AGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 4374
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| || || || || || || |||| || ||||| |||
Sbjct 4375 TCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCC 4434
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| || ||| ||| ||||| |||||||| || || || |||||||| ||||| |||
Sbjct 4435 TGAATTTTTGATTTGACGTTGTCGATGGTATCGGACGACTCCACCTCGAGGGTGATAGTC 4494
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || || || ||||| || || | |||||||
Sbjct 4495 TTGCCGGTCAGGGTCTTGACGAAGATCTGCATT 4527
Score = 152 bits (168), Expect = 1e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| ||||| ||||| || |||||||| || |||| || || | || ||
Sbjct 4087 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTTCGGCCGTCC 4146
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| |||||| || || ||||| || ||||| ||||| || |||| || || || |||
Sbjct 4147 TCCAACTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGGGGAATACCCTCTTTATCC 4206
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| |||||||| ||||| ||||| || |||||||| || |||||||||
Sbjct 4207 TGGATCTTGGACTTCACGTTGTCGATTGTGTCGGACGACTCAACCTCTAGCGTGATCGTC 4266
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| || || | ||||||
Sbjct 4267 TTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 4298
Score = 140 bits (154), Expect = 8e-28
Identities = 145/190 (76%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || ||||| ||||| || |||||||| || || | || || | ||||||
Sbjct 4826 AGGACGAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCATCC 4885
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||||||||| || | ||| ||||||||||| || | |||||||| |||
Sbjct 4886 TCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGTTGGTCAGGCGGGATGCCTTCCTTATCC 4945
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || || || ||||| ||| || ||||| | ||||| |||
Sbjct 4946 TGGATCTTCGACTTGACATTGTCAATCGTGTCCGAGGACTCCACCTCCAAGGTGATGGTC 5005
Query 211083 TTTCCCGTGA 211092
|| || ||||
Sbjct 5006 TTGCCGGTGA 5015
Score = 129 bits (142), Expect = 1e-24
Identities = 145/193 (75%), Gaps = 6/193 (3%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || || |||||||| || || ||||| || || | ||||| | |||||
Sbjct 4543 AGGACGAGATGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCC 4602
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| | || |||||||| || || | || ||||| |||
Sbjct 4603 TCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGGATGCCCTCCTTATCC 4662
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079
|||||||| ||| ||||| |||||||| || ||| ||| ||||| || || ||
Sbjct 4663 TGGATCTTCGATTTGACGTTGTCGATGGTATC---GCTCGATTCGACCTCAAGGGTAATG 4719
Query 211080 GTCTTTCCCGTGA 211092
||||| || ||||
Sbjct 4720 GTCTTACCGGTGA 4732
>seq738
Length=174967
Score = 109 bits (120), Expect = 1e-18
Identities = 101/128 (79%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| ||||| ||||| || |||||||| || || | |||||| | |||||
Sbjct 25244 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 25303
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| | || |||||||| || |||| || |||||||||
Sbjct 25304 TCGAGCTGCTTGCCGGCGAAGATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC 25363
Query 211023 TGGATCTT 211030
|| |||||
Sbjct 25364 TGAATCTT 25371
>seq634
Length=211807
Score = 102 bits (112), Expect = 2e-16
Identities = 193/283 (68%), Gaps = 6/283 (2%)
Strand=Plus/Plus
Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGG 178142
|||| | |||||| |||||||| || | |||| ||||| ||||| || | |
Sbjct 37204 TTCCGAGGTTCTTCTGGTTGCTTTTGCGGTTGCAT---GCATCCTTGTAGAGCATATACG 37260
Query 178143 GCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAG 178202
| |||| ||| | || ||| |||| ||| | ||| |||| |||||| || ||||
Sbjct 37261 GGTTTCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCAGAGCTTCTGGGCGCGCACAG 37320
Query 178203 TCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCAT 178262
||| | | ||| || ||| ||||| | || ||||||||||| || ||||
Sbjct 37321 TCTCTCGTCCGCGTCCCTCGGCCTCATACTTGTGATACAGCTCCTCGAACTCGTCGCCAT 37380
Query 178263 AGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCT 178322
|||| || | | || || || || || |||||||| ||| |||||| || | ||||
Sbjct 37381 AGACGTCGGCCAACCCAGGGGCTTCGTTCGGGCAGAAAAGAGTCCACTCTCCATTATCCT 37440
Query 178323 TCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
|| || |||||||||||||||| |||| | || |||||
Sbjct 37441 GGACCCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 37483
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159140697905765
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |