Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clohesyomyces_20aquaticus_20[genbank_20GCA_5F002105025.1_202017-04- 20] 761 sequences; 49,677,730 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq412 156 4e-33 seq738 140 3e-28 seq11 129 5e-25 >seq412 Length=249799 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||| ||||| ||||| |||||||| Sbjct 4300 CCACCTCGCAGACGCAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 4359 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||||||||| || || ||||| || |||| |||| Sbjct 4360 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 4419 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| ||| |||||| || ||| | | | || ||| ||||||||| Sbjct 4420 ATGCCCTCCTTATCC-TGAATTTTTGATTTGACGTTGTCGATGGTATCGGACGACTCCAC 4478 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||| ||||| ||||| |||||||| Sbjct 4479 CTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4526 Score = 140 bits (154), Expect = 3e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| |||||| ||||||||||||||| |||||||| Sbjct 4528 CCACCACGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAC 4587 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||||||||| |||| ||||||||||| | ||| Sbjct 4588 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGG 4647 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| || | || | || ||| | | | || |||||||| || || Sbjct 4648 ATGCCCTCCTTATCC-TGGATCTTCGATTTGACGTTGTCGATGGTATCGCTCGATTCGAC 4706 Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838 ||| | || || || ||||| || Sbjct 4707 CTCAAGGGTAATGGTCTTACCGGT 4730 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || |||||||| || ||||||||| ||||| |||||||| Sbjct 4811 CCACCGCGGAGACGAAGGACGAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAC 4870 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||||||||| ||||| |||| |||||||||||| | || Sbjct 4871 AGAGTACGTCCATCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGTTGGTCAGGCGGG 4930 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || ||||| ||| ||| || Sbjct 4931 ATGCCTTCCTTATCCTGGATCTT 4953 >seq738 Length=174967 Score = 140 bits (154), Expect = 3e-28 Identities = 112/135 (83%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||||| ||||| || ||||||||| ||||| |||||||| Sbjct 25229 CCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 25288 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||||||||| |||| ||||||||||||| |||| Sbjct 25289 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGTTGGTCCGGGGGA 25348 Query 41756 ACGCTCTCCTTGTCC 41770 | || |||||||||| Sbjct 25349 ATGCCCTCCTTGTCC 25363 >seq11 Length=137347 Score = 129 bits (142), Expect = 5e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||| ||||| ||||||||| Sbjct 124714 CCACCACGCAGACGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 124773 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||| |||||||| ||||| ||||||||||| | |||| Sbjct 124774 AGGGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGTTGGTCTGGGGGA 124833 Query 41756 ACGCTCTCCTTGTC 41769 | || ||||||||| Sbjct 124834 ATGCCCTCCTTGTC 124847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462299602333200