Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq72 163 3e-35 >seq72 Length=1307737 Score = 163 bits (180), Expect = 3e-35 Identities = 466/705 (66%), Gaps = 26/705 (4%) Strand=Plus/Minus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || || | || ||||| | | ||| | ||| | || || || ||||| Sbjct 1152812 CCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATG 1152753 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 ||||||||||| ||||| ||||||| || || |||| | | || || ||||| Sbjct 1152752 AAGAGATCAGGGATCCATAGAGCTAGGAACAGGTCTCGTGCACGGATCTCTTCCTTTCCG 1152693 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||||| |||||| |||||| | | | |||||| ||||| || || | || || Sbjct 1152692 TGATTCTTTCGAAGATCCAGGAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATA 1152633 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | ||||| || ||||| || |||||||| | ||||| || ||||| || | Sbjct 1152632 GCAAAGGCACCAGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCAGTGTTGTTGAAC 1152573 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 |||| || ||| || || || |||||||||| || ||||| |||| || || || Sbjct 1152572 ACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTTCCGGCAATGTACGAGCCT 1152513 Query 54281 CTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 | |||||||| || ||| ||||| || || |||||||| || ||||| | | Sbjct 1152512 GTAGCACGAATGCGGTGAACGTTG--AGACCGATACCTCCTGCCATCTTTGAGATCATGG 1152455 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 | || || | ||||| ||||| || || || || |||||| |||| | | || | Sbjct 1152454 CACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGA 1152395 Query 54399 AACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 | || || | | ||| | || || || ||||| || | || |||||||| Sbjct 1152394 AGCATGATGAGA---GCTGA-GCCTGGGGGGTACCGGCATTGAAGAGAGTGGGAGAAGCA 1152339 Query 54455 TGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTA---TATC 54510 || ||||| | || | || | |||| ||||| |||||||| | || | |||| Sbjct 1152338 TGAGTAAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCGATGACACGTTCAATGTTATC 1152280 Query 54511 -CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 54569 || | || || || || |||||||| | ||||||||| || | ||||| |||| Sbjct 1152279 ACCCCAG----ATACCCACAGCAACACGCATGATCATGTGCTGTGGGCGCTCAACAATCT 1152224 Query 54570 TGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-- 54627 || ||| | || || | ||||| |||| || || ||||| || || | || Sbjct 1152223 TGCCGTTGAGCTTGAGGAGATAGGAACGCTCCAGTGTCTTGAAACCGAAGTACTGATAGT 1152164 Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 ||||| ||||| || || | ||| | |||| || | ||||| Sbjct 1152163 TGAAA--TCTCGGTCATAGACAATGGCAGAGTCCAGCTCGTCCTT 1152121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718074778000