Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq322 93.3 4e-14 seq273 89.7 4e-13 >seq322 Length=957674 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | || | ||||||||||| || ||||| ||||| | Sbjct 93490 CCACCACGCAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 93549 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||| || | || || | ||| ||||| ||| Sbjct 93550 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGG 93609 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || | |||| Sbjct 93610 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 93669 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||| || ||||| || || | || ||||| || || ||||| ||| Sbjct 93670 TCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 93720 >seq273 Length=2741725 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||||||||||| || ||||| ||||| | Sbjct 1841361 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1841420 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| || || || |||| || | ||| ||||| || Sbjct 1841421 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGGG 1841480 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| || || | | ||| |||||| | ||| Sbjct 1841481 ATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 1841540 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| | || ||||| || || ||||| Sbjct 1841541 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1841587 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | ||||||||||| || ||||| ||||| | Sbjct 1841075 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1841134 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| ||||| ||| | || || | ||| ||||| || Sbjct 1841135 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGG 1841194 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| || || | | ||| || ||| | || Sbjct 1841195 ATACCCTCCTTGTCCTGAATCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGACC 1841254 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 || | ||| || ||||||||||| | || ||||| Sbjct 1841255 TCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTGAC 1841289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422256755515100