Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq272 178 1e-39 seq322 156 4e-33 seq273 129 6e-25 seq200 123 3e-23 >seq272 Length=795643 Score = 178 bits (196), Expect = 1e-39 Identities = 215/287 (75%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||| ||| || || |||||||| | ||||| | || ||| Sbjct 62685 ATCTGGCAAATGTACAAGAAGCACGAAGCTTCTTTCTGGACTGCTGAGGAAATCGATCTG 62744 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | ||| ||||||| |||||||| | ||| || Sbjct 62745 TCCAAGGATCTCCA-CGACTGGCACACCCGCATGAACGATGACGAGCGCTACTTCGTCTC 62803 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || ||||| ||||| ||| || ||||| ||||| ||||| ||||| ||||| Sbjct 62804 TCACGTTCTTGCCTTCTTCGCTGCCTCTGATGGCATTGTCAATGAGAACCTGGTTGAGCG 62863 Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||| || | | |||| ||| | | ||||| |||||||||||||| || |||||| | Sbjct 62864 CTTCAGCGCTG-AGGTCCAGATTCCTGAGGCTCGGTGCTTCTACGGATTCCAGATCATGA 62922 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||| | |||||||| | || || |||||||||||| ||| Sbjct 62923 TGGAGAACATCCACTCGGAGACCTACTCCCTCCTCATCGACACATAC 62969 Score = 125 bits (138), Expect = 7e-24 Identities = 297/442 (67%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||||||||| | |||||||| | || | || | |||| |||| | Sbjct 63086 AGAAGGCCGAGTGGGCAATTCGCTGGATTCAGGACAAGAAATCCACATTCGCTCAGCGTC 63145 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || |||||||| ||||| |||||| ||||||| || |||||| |||| || | Sbjct 63146 TTGTTGCCTTCGCTGCCGTTGAGGGCATCTTCTTCAGCGGTGCTTTCGCTTCCATCTTCT 63205 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 || | ||||| || || || ||||| || || || ||| ||||||||| |||||| | | Sbjct 63206 GGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCCCGTG 63265 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 |||||||||| || ||||| || || | || | || | | || | | Sbjct 63266 ACGAGGGTCTTCACACTGACTTCGCTTGCCTACTCCACTCCCACCTAAACAATCGCGCAA 63325 Query 117222 GCGCGGCGCGCGTCAGGGAG---ATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCC 117278 || || | |||| ||| ||| |||| ||||| ||| |||| ||| || ||| Sbjct 63326 GCAAGGAG---GTCATTGAGAGCATCATCACTGACGCCGTCACCATTGAGAAGGAGTTCT 63382 Query 117279 TCACCGAAGCGCTGCCGGTGCGTC-TGCTGGGACTCAATTGCGAAAC-GATGTCGCAATA 117336 | ||||| || || || |||| | ||||||| | || || || | ||| ||| || Sbjct 63383 TGACCGAGGCTCTTCC-TTGCGCCATGCTGGGCATGAA-CGCCAACCTTATGAAGCAGTA 63440 Query 117337 CATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACAC 117396 |||||||| || |||||| | || ||| | | || | || |||| ||||| | Sbjct 63441 TATCGAGTTTGTTGCCGACCGTCTTCTGGTTGCTCTCGGTAACGACAAGGTGTACAAGTC 63500 Query 117397 GCCCAACCCGCTGGACTTTATG 117418 | | ||||| | ||||| ||| Sbjct 63501 GACTAACCCCTTCGACTTCATG 63522 >seq322 Length=957674 Score = 156 bits (172), Expect = 4e-33 Identities = 176/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| |||| || || | Sbjct 93719 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACTATCACCCTCGAGGTGGAGTCT 93660 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||||||| | || Sbjct 93659 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 93601 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || || || |||| ||| ||||| ||||| || |||| ||||||||| |||||| Sbjct 93600 CCAACAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTA 93541 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 |||||||||||||||| |||| || || || || | ||| || | || |||| Sbjct 93540 CAACATCCAGAAGGAGTCCACCCTCCACCTCGTCCTCCGCCTGCGTGGTGGCG 93488 >seq273 Length=2741725 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | | Sbjct 1841587 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 1841528 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || |||| ||||| ||||| ||||| | ||||| Sbjct 1841527 GATACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATCCCTCCTGACCAA 1841468 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || ||||| || || | ||||||||| |||||||||| Sbjct 1841467 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 1841408 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 1841407 ATCCAGAAGGAGTCCACCCTCCACCTGGT 1841379 Score = 127 bits (140), Expect = 2e-24 Identities = 146/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| ||||| || |||||| |||| |||||| | | |||| | | Sbjct 1841291 TCGTCAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAATCTTCTGACACCATCG 1841232 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| | ||| || |||| ||||| ||||| ||||| | ||||| || || || Sbjct 1841231 ACAACGTT-AAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAACAGCGCCTG 1841173 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || || | ||||||||| ||||||||||||||||||| Sbjct 1841172 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 1841113 Query 40879 GAGGCCACGCTGCA 40892 ||| |||| || || Sbjct 1841112 GAGTCCACCCTCCA 1841099 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || ||||| | || |||||| | | Sbjct 1841073 ATGCAGATTTTCGTCAAGACACTCACGGGAAAGACTATCACACTGGAAGTCGAATCATCG 1841014 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | | ||| || || | || || ||||| || || | ||||| Sbjct 1841013 GACACGATTGACAATG-TGAAGTCGAAGATCCAGGATAAGGAGGGTATTCCTCCTGACCA 1840955 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || ||||| || |||| || ||||| |||||||| Sbjct 1840954 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAAGACGGCCGTACCCTTTCTGACTACAA 1840895 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || || || || Sbjct 1840894 CATCCAGAAGGAGTCCACCCTTCACCTGGT 1840865 >seq200 Length=1806557 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || |||||| | | Sbjct 889294 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATT 889235 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || |||| ||||| ||||| || ||| | ||||| || || || Sbjct 889234 GACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAACAGCGCCTG 889175 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | ||||||||| |||||||||||||||||| Sbjct 889174 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCAGACTACAACATCCAGAAG 889115 Query 40879 G 40879 | Sbjct 889114 G 889114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216140886000