Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq273 123 2e-23 seq322 107 2e-18 seq200 84.2 2e-11 >seq273 Length=2741725 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||| ||| | ||||| |||||| Sbjct 1841092 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTC 1841151 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || ||||| |||| || ||||| || |||||||| || ||||||||||| Sbjct 1841152 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTG 1841211 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || ||||| | |||| |||||| | |||||||||| ||| | || || Sbjct 1841212 AATCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGACCTCGAGGGTGATAGTCTT 1841271 Query 118709 GCCGGTCAGAGTTTTTAC 118726 |||||| || || || || Sbjct 1841272 GCCGGTGAGGGTCTTGAC 1841289 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||| | ||||| |||||| Sbjct 1841379 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCA 1841438 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| | || || ||||| || || ||||| || ||||||||||| | Sbjct 1841439 AGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGGGATTCCCTCCTTGTCCTGA 1841498 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | ||||||||||| ||| | || ||| Sbjct 1841499 ATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTG 1841558 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || |||||||||||| Sbjct 1841559 CCGGTGAGGGTCTTGACGAAAATCTGCATG 1841588 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || | || || || || Sbjct 1840865 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCA 1840924 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||||||| |||||||||||||||| || ||||| || |||||||| || Sbjct 1840925 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTATCCTGG 1840984 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | ||||||| || | ||||| || | || | || || Sbjct 1840985 ATCTTCGACTTCACATTGTCAATCGTGTCCGATGAT-TCGACTTCCAGTGTGATAGTCTT 1841043 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 1841044 TCCCGTGAGTGTCTTGACGAAAATCTGCAT 1841073 >seq322 Length=957674 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| | ||||| ||||||||||| Sbjct 93513 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 93572 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||| || ||||| || ||||| || |||||||||||||| || || Sbjct 93573 CTTGCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 93632 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | ||| ||||||| ||| | || || || || Sbjct 93633 GGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGT 93692 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||||||||| Sbjct 93693 GAGGGTCTTGACGAAAATCTGCAT 93716 >seq200 Length=1806557 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| |||||||||||| || || ||| |||| Sbjct 889116 TTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 889175 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || ||||| || || || || || ||||||||||| ||| || || || | || Sbjct 889176 AGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCA 889235 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | |||||| | | ||||||||| | ||| | || ||||| ||||| || || || || Sbjct 889236 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 889294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827888528700