Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq273 95.1 1e-14 >seq273 Length=2741725 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| || || || |||| || |||||||| |||||||| Sbjct 1840882 CTCCTTCTGGATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCAAGCTGCTTTCCAGCGAA 1840941 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | |||||| ||| ||| || || | | Sbjct 1840942 GATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTATCCTGGATCTTCGACTTCACATT 1841001 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||||| || || | ||||| || || ||||| || ||||| || Sbjct 1841002 GTCAATCGTGTCCGATGATTCGACTTCCAGTGTGATAGTCTTTCCCGTGAGTGTCTTGAC 1841061 Query 43172 AAAGATTTGCAT 43183 || || ||||| Sbjct 1841062 GAAAATCTGCAT 1841073 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || | || || ||||||||||||||||| Sbjct 1841396 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 1841455 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||| ||||| | || | | |||||||||| ||| | || | |||| Sbjct 1841456 AATCAGGCGCTGTTGGTCAGGAGGGATTCCCTCCTTGTCC-TGAATCTTCGACTTGACAT 1841514 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || || || || |||| |||||||| ||||| || || ||||| | Sbjct 1841515 TGTCGATGGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 1841574 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 1841575 CGAAAATCTGCAT 1841587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571814204833000