Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq72 309 3e-79 seq272 125 6e-24 >seq72 Length=1307737 Score = 309 bits (342), Expect = 3e-79 Identities = 645/952 (68%), Gaps = 8/952 (1%) Strand=Plus/Minus Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA-CGT-GTACTCTACAATTTCGGTA 23083 ||| || || ||||| || || ||||| || ||| || ||| || | ||| || || Sbjct 1153083 CGAAGCCAGGTTGCAAACAGCAACCTCATCG--GGAGCGCAGTATTCAATAATCTCAGTG 1153026 Query 23084 CATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 || |||||| | || || |||| || |||||||||| || || ||||| | | Sbjct 1153025 CAAAGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCA 1152966 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 |||||||| |||||| | || | || |||||| || | |||| |||| |||| Sbjct 1152965 TCCTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGAATCGAGTACCAC 1152906 Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAA 23262 | |||| || | | |||| ||| | | || || | ||| ||||| | ||| | Sbjct 1152905 AGCTTCTGGGCACGGAT-CGTCTGACGACCACGACCCTCCTTCTCATACTTCTCGTAAAG 1152847 Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 || ||||| || | ||||| ||||| |||||||| || | | | || |||||||| Sbjct 1152846 GGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAG 1152787 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 | |||| | || || |||||||| |||| || ||||| || ||||||||||| Sbjct 1152786 AGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATGAAGAGATCAGGGATCCATAGAGCTAG 1152727 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 |||||| || || || || | ||| || || ||| |||||| | ||||| || || Sbjct 1152726 GAACAGGTCTCGTGCACGGATCTCTTCCTTTCCGTGATTCTTTCGAAGATCCAGGAACTC 1152667 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || || || | ||||| |||||||| || | ||||| || || || | ||| ||||| Sbjct 1152666 GAAGACATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGGCGCTTGTTGCC 1152607 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 |||||||| || || | ||| ||||||||| |||||| ||||| || | || || || Sbjct 1152606 ACCCTGATCAACATATCTGGCAGTGTTGTTGAACACTCGCAGCATGGGGATGATTCCATT 1152547 Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622 ||| | |||| || || | ||| ||| | || |||| | |||||||| || Sbjct 1152546 GGATGTGCCGTTGGTTCCGGCAATGTACGAGCCTGTAGCACGAATGCGGTGAACGTTGAG 1152487 Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682 ||| || ||||| || || || ||||| || || || ||||| |||||||| || Sbjct 1152486 ACCGATACCTCCTGCCATCTTTGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATACC 1152427 Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742 || |||||||| || || | |||| | ||| || || || | || || | ||| || Sbjct 1152426 GTCAATGCTGTCATCCTTCATATCGACAAGGAAGCATGATGAGAGCTGAGCCTGGGGGGT 1152367 Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGT 23801 | |||| ||| || || || || || |||||| | || ||||| ||| |||| Sbjct 1152366 ACCGGCATTGAAGAGAGTGGGAGAAGCATGAGTAAAGAACTTGTTGGACATGTAG-TTGT 1152308 Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861 | || |||||| | ||||||| || || ||||| | || || ||||| |||| Sbjct 1152307 AGGTCTCGATGACACGTTCAATGTTATCACCCCAGATACCCACAGCAACACGCATGATCA 1152248 Query 23862 TGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCG 23921 ||| || || | ||| || | |||||| | |||| ||||| ||||| | || | Sbjct 1152247 TGTGCTGTGGGCGCTCAACAATCTTGCCGTTGAGCTTGAGGAGATAGGAACGCTCCAGTG 1152188 Query 23922 TTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 | || || || || || | |||||| || || || || | || ||||| || Sbjct 1152187 TCTTGAAACCGAAGTACTGATAGTTGAAATCTCGGTCATAGACAATGGCAGA 1152136 >seq272 Length=795643 Score = 125 bits (138), Expect = 6e-24 Identities = 261/386 (68%), Gaps = 2/386 (1%) Strand=Plus/Plus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973 ||||||||| |||||| |||| ||||| | | | |||| ||||| || | Sbjct 63084 CAAGAAGGCCGAGTGGGCAATTCGCTGGATTCAGGACAAGAAATCCACATTCGCTCAGCG 63143 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT-GCGGCAATAT 58032 || | || ||||| ||||| || || || ||||| || ||||| || | || | Sbjct 63144 TCTTGTTGCCTTCGCTGCCGTTGAGGGCATCTTCTTCAGCGGT-GCTTTCGCTTCCATCT 63202 Query 58033 TTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC 58092 | ||| ||||||| || || |||||||| || || || || ||||||| |||| || | Sbjct 63203 TCTGGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCCC 63262 Query 58093 GCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC 58152 | ||||||||||| || ||||| || || |||||| | |||| ||| | |||| Sbjct 63263 GTGACGAGGGTCTTCACACTGACTTCGCTTGCCTACTCCACTCCCACCTAAACAATCGCG 63322 Query 58153 CGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212 | | ||| ||| | ||| ||||| || || ||| | || || || ||||| Sbjct 63323 CAAGCAAGGAGGTCATTGAGAGCATCATCACTGACGCCGTCACCATTGAGAAGGAGTTCT 63382 Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272 | ||||| || || || |||||||| || |||||| | | ||| |||| | Sbjct 63383 TGACCGAGGCTCTTCCTTGCGCCATGCTGGGCATGAACGCCAACCTTATGAAGCAGTATA 63442 Query 58273 TTGAGTTTGTTGCCGACAGACTTTTG 58298 | ||||||||||||||| | ||| || Sbjct 63443 TCGAGTTTGTTGCCGACCGTCTTCTG 63468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763753262000