Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq272 125 1e-23 seq72 116 7e-21 >seq272 Length=795643 Score = 125 bits (138), Expect = 1e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||||||||| ||||| ||||| || |||||||| || ||||| ||||| ||||| |||| Sbjct 63146 TTGTTGCCTTCGCTGCCGTTGAGGGCATCTTCTTCAGCGGTGCTTTCGCTTCCATCTTCT 63205 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || | ||||| | ||| | ||||||||||||||| |||||| ||| | || || | | Sbjct 63206 GGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCCCGTG 63265 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGC 102064 |||| |||||||| ||||| || ||| Sbjct 63266 ACGAGGGTCTTCACACTGACTTCGCTTGC 63294 >seq72 Length=1307737 Score = 116 bits (128), Expect = 7e-21 Identities = 419/644 (65%), Gaps = 16/644 (2%) Strand=Plus/Minus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 |||||| |||||||| | |||| |||||| ||||| | | ||| | ||||||||||| Sbjct 1152864 CTCATACTTCTCGTAAAGGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCA 1152805 Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---ACTCTCTCCATGAAGAG 94523 ||||| |||||||| || | ||| |||| | |||| || | || ||||||||| Sbjct 1152804 CTCGTTAGGGCACATGAGAGTCCAGTTCT---CGTTCTTCTCAACGCGCTTCATGAAGAG 1152748 Query 94524 ATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCT--TCATTACCGGCA 94581 ||||| | ||| | |||| |||| || || |||| | | |||| || || ||| | Sbjct 1152747 ATCAGGGATCCATAGAGCTAGGAACAGGTC--TCGTGCACGGATCTCTTCCTTTCCGTGA 1152690 Query 94582 TTCTTTCTGCAG-TCAATAAAGTCCTTCACGTCCAGA-TGCCAATCAGAAATATAGATGG 94639 ||||||| | || || | || || || || ||| ||||| | |||||| | Sbjct 1152689 TTCTTTC-GAAGATCCAGGAACTCGAAGACATC-AGAGTGCCAGGGCTCGAGATAGATAG 1152632 Query 94640 CTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTTAAAGA 94699 | || || | ||||| || ||||| ||| | | | ||| | ||| || | Sbjct 1152631 CAAAGGCACCAGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCAGTGTTGTTGAACA 1152572 Query 94700 TTTGGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGACGAAATGGGGCTTCCTT 94759 | | || | | |||| ||| | || || | | | |||| ||| Sbjct 1152571 CTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTTCCGGCAATGTACGAGCCTG 1152512 Query 94760 TTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCG 94819 | || | | |||| || || |||| ||||| || |||| ||||| || || Sbjct 1152511 TAGCACGAATGCGGTGAACGTTGAGACCGATACCTCCTGCCATCTTTGAGATCATGGCAC 1152452 Query 94820 CCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGC 94879 ||| |||||||| || ||||| |||||||| ||||| | | | | |||||||| Sbjct 1152451 AGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGAAGC 1152392 Query 94880 ACGAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAA 94939 | || || || || | | || || ||| || || ||||| |||||||| |||| Sbjct 1152391 ATGATGAGAGCTGAGCCTGGGGGGTACCGGCATTGAAGAGAGTGGGAGAAGCATGAGTAA 1152332 Query 94940 AATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTC-TGATCCGTGA 94998 | | | | |||||| | || || || |||||| || |||| | | || || Sbjct 1152331 AGAACTTGTTGGACATGTAGTTGTAGGTCTCGATGACACGTTCAATGTTATCACCCCAGA 1152272 Query 94999 ATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 | || ||||| |||||||| ||||||| ||| ||||||||||| Sbjct 1152271 -TACCCACAGCAACACGCATGATCATGTGCTGTGGGCGCTCAAC 1152229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989577977453625