Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq72 152 6e-32 seq272 93.3 5e-14 >seq72 Length=1307737 Score = 152 bits (168), Expect = 6e-32 Identities = 431/653 (66%), Gaps = 18/653 (3%) Strand=Plus/Minus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 || || ||||| ||||||||||| ||||| ||||||| || || |||| || | Sbjct 1152764 ACGCGCTTCATGAAGAGATCAGGGATCCATAGAGCTAGGAACAGGTCTCGTGCACGGATC 1152705 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 || || ||||| ||||||| |||||| |||||| | | | |||||| ||||| || Sbjct 1152704 TCTTCCTTTCCGTGATTCTTTCGAAGATCCAGGAACTCGAAGACATCAGAGTGCCAGGGC 1152645 Query 63387 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63446 || | || || || | | ||||| || ||||| || |||||||| | ||||| || Sbjct 1152644 TCGAGATAGATAGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCA 1152585 Query 63447 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63506 ||||| || | |||| || ||| || || || || || ||| | || ||||| |||| Sbjct 1152584 GTGTTGTTGAACACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTTCCGGCA 1152525 Query 63507 ATATAGCCTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTT 63564 || || || | |||||||| || ||| ||||| || || |||||||| | Sbjct 1152524 ATGTACGAGCCTGTAGCACGAATGCGGTGAACGTTG--AGACCGATACCTCCTGCCATCT 1152467 Query 63565 TAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA 63624 | ||||| | || || || | || || ||||| || || ||||| ||||| ||| Sbjct 1152466 TTGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCA 1152407 Query 63625 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAG 63684 | | | || || || || | || | | || || ||||| || | || | Sbjct 1152406 TATCGACAAGGAAGCATGATGAGAGCTGAGCCTGGGGGGTACCGGCATTGAAGAGAGTGG 1152347 Query 63685 GAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCT 63743 ||||||| || ||||| | || | || | |||| ||||| ||||| || | || Sbjct 1152346 GAGAAGCATGAGTAAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCGATGACACGTTCA 1152288 Query 63744 A---TATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 | |||| || | || || || || |||||||| | ||||||||| || | || Sbjct 1152287 ATGTTATCACCCCAG----ATACCCACAGCAACACGCATGATCATGTGCTGTGGGCGCTC 1152232 Query 63800 AACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63859 |||||| ||| ||| | || | | ||||| |||| || || ||||| || || Sbjct 1152231 AACAATCTTGCCGTTGAGCTTGAGGAGATAGGAACGCTCCAGTGTCTTGAAACCGAAGTA 1152172 Query 63860 GTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 | || ||||| ||||| || || | ||| | || | |||| ||||| Sbjct 1152171 CTGATAGTTGAAA--TCTCGGTCATAGACAATGGCAGAGTCCAGCTCGTCCTT 1152121 >seq272 Length=795643 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| || ||| ||||||||||| | || | ||||| || || ||||| Sbjct 63293 CAAGCGAAGTCAGTGTGAAGACCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGA 63234 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || |||||||| || | ||| || ||||||||||| | ||| |||||| Sbjct 63233 CCAGGCATCAGACCACGCTTCTTCAACCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAG 63174 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 || || || || ||||| ||||||| ||| Sbjct 63173 ATGCCCTCAACGGCAGCGAAGGCAACAAG 63145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813860458000