Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq72 154 2e-32 >seq72 Length=1307737 Score = 154 bits (170), Expect = 2e-32 Identities = 464/705 (66%), Gaps = 26/705 (4%) Strand=Plus/Minus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 ||||| || || | || ||||| | | ||| | ||| | || || || ||||| Sbjct 1152812 CCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATG 1152753 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 ||||||||||| ||||| ||||||| || | |||| | | || || ||||| Sbjct 1152752 AAGAGATCAGGGATCCATAGAGCTAGGAACAGGTCTCGTGCACGGATCTCTTCCTTTCCG 1152693 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 ||||||| |||||| |||||| | | | |||| | ||||| || || | || || Sbjct 1152692 TGATTCTTTCGAAGATCCAGGAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATA 1152633 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | ||||| || ||||| || |||||||| | ||||| || ||||| || | Sbjct 1152632 GCAAAGGCACCAGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCAGTGTTGTTGAAC 1152573 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 |||| || ||| || || || ||||||||||| || ||||| |||| || || || Sbjct 1152572 ACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTTCCGGCAATGTACGAGCCT 1152513 Query 66312 CTTGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 | |||||||| || ||| ||||| || || |||||||| || ||||| | | Sbjct 1152512 GTAGCACGAATGCGGTGAACGTTG--AGACCGATACCTCCTGCCATCTTTGAGATCATGG 1152455 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 | || || | ||||| ||||| || || || || |||||| |||| | | || | Sbjct 1152454 CACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGA 1152395 Query 66430 AACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCG 66485 | || || | | ||| | || || || ||||| || | || |||||||| Sbjct 1152394 AGCATGATGAGA---GCTGA-GCCTGGGGGGTACCGGCATTGAAGAGAGTGGGAGAAGCA 1152339 Query 66486 TGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTA---TATC 66541 || ||||| | || | || | |||| ||||| ||||| || | || | |||| Sbjct 1152338 TGAGTAAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCGATGACACGTTCAATGTTATC 1152280 Query 66542 -CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 66600 || | || || || || |||||||| | ||||||||| || | ||||| |||| Sbjct 1152279 ACCCCAG----ATACCCACAGCAACACGCATGATCATGTGCTGTGGGCGCTCAACAATCT 1152224 Query 66601 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-- 66658 || ||| | || | | ||||| |||| || || ||||| || || | || Sbjct 1152223 TGCCGTTGAGCTTGAGGAGATAGGAACGCTCCAGTGTCTTGAAACCGAAGTACTGATAGT 1152164 Query 66659 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703 ||||| ||||| || || | ||| | |||| || | ||||| Sbjct 1152163 TGAAA--TCTCGGTCATAGACAATGGCAGAGTCCAGCTCGTCCTT 1152121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168892099000