Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq72 176 6e-39 seq272 89.7 7e-13 >seq72 Length=1307737 Score = 176 bits (194), Expect = 6e-39 Identities = 408/603 (68%), Gaps = 24/603 (4%) Strand=Plus/Minus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACT-CTCCATCATCCTTTACTCGTTTCAT 79949 ||||| || |||| ||| ||||| | | ||| | ||| || || | || || ||||| Sbjct 1152812 CCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTC-TCAACGCGCTTCAT 1152754 Query 79950 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 80009 ||||||||||| ||||| ||||||| || || |||| | | ||| || ||||| Sbjct 1152753 GAAGAGATCAGGGATCCATAGAGCTAGGAACAGGTCTCGTGCACGGATCTCTTCCTTTCC 1152694 Query 80010 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 80069 ||||||| |||||| |||||| | | | |||||| ||||| || || | || || Sbjct 1152693 GTGATTCTTTCGAAGATCCAGGAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGAT 1152634 Query 80070 GGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 80129 || | | || || || ||||| || |||||||| | ||||| || ||||| || | Sbjct 1152633 AGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCAGTGTTGTTGAA 1152574 Query 80130 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 80189 |||| || ||| || || || ||||||||||| || ||||| |||| || || || Sbjct 1152573 CACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTTCCGGCAATGTACGAGCC 1152514 Query 80190 ACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 80247 | |||||||| || ||| ||||| || || |||||||| || ||||| | Sbjct 1152513 TGTAGCACGAATGCGGTGAACGTTG--AGACCGATACCTCCTGCCATCTTTGAGATCATG 1152456 Query 80248 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGA 80307 || || || | ||||| ||||| || || ||||| ||||| |||| | | || Sbjct 1152455 GCACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGG 1152396 Query 80308 AAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGC 80363 || || || | | ||| | || || || ||||| || | || |||||||| Sbjct 1152395 AAGCATGATGAGA---GCTGA-GCCTGGGGGGTACCGGCATTGAAGAGAGTGGGAGAAGC 1152340 Query 80364 GTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTA---TAT 80419 || ||||| | || | |||| |||| ||||| ||||| || | ||| | ||| Sbjct 1152339 ATGAGTAAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCGATGACACGTTCAATGTTAT 1152281 Query 80420 C-CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 80478 | || | || || || || |||||||| | ||||||||| || | ||||| ||| Sbjct 1152280 CACCCCAG----ATACCCACAGCAACACGCATGATCATGTGCTGTGGGCGCTCAACAATC 1152225 Query 80479 TTG 80481 ||| Sbjct 1152224 TTG 1152222 >seq272 Length=795643 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| || ||| ||||||||||| | || || |||||||| || ||||| Sbjct 63293 CAAGCGAAGTCAGTGTGAAGACCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGA 63234 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || |||||||| || | ||| || ||||| || || | || |||||| Sbjct 63233 CCAGGCATCAGACCACGCTTCTTCAACCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAG 63174 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 || || || || || || ||||||||||| Sbjct 63173 ATGCCCTCAACGGCAGCGAAGGCAACAAG 63145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264535279000