Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq72 167 3e-36 >seq72 Length=1307737 Score = 167 bits (184), Expect = 3e-36 Identities = 406/603 (67%), Gaps = 24/603 (4%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACT-CTCCATCATCATTTACTCGTTTCAT 72032 ||||| || || || || ||||| | | ||| | ||| || || | || || ||||| Sbjct 1152812 CCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTC-TCAACGCGCTTCAT 1152754 Query 72033 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 ||||||||||| ||||| ||||||| || || |||| | | ||| || ||||| Sbjct 1152753 GAAGAGATCAGGGATCCATAGAGCTAGGAACAGGTCTCGTGCACGGATCTCTTCCTTTCC 1152694 Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152 ||||||| |||||| |||||| | | | |||||| ||||| || || | || || Sbjct 1152693 GTGATTCTTTCGAAGATCCAGGAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGAT 1152634 Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212 || | | || || || ||||| || |||||||| | ||||| || ||||| || | Sbjct 1152633 AGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCAGTGTTGTTGAA 1152574 Query 72213 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272 |||| || ||| || || || |||||||||| || ||||| |||| || || || Sbjct 1152573 CACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTTCCGGCAATGTACGAGCC 1152514 Query 72273 ACTGGCACGAATATTGCTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330 | |||||||| | || ||| ||||| || || |||||||| || ||||| | Sbjct 1152513 TGTAGCACGAATGCGGTGAACGTTG--AGACCGATACCTCCTGCCATCTTTGAGATCATG 1152456 Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 || || || | ||||| ||||| || || || || |||||| |||| | | || Sbjct 1152455 GCACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGG 1152396 Query 72391 AAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGC 72446 || || || | | ||| | || || || ||||| || | || |||||||| Sbjct 1152395 AAGCATGATGAGA---GCTGA-GCCTGGGGGGTACCGGCATTGAAGAGAGTGGGAGAAGC 1152340 Query 72447 GTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTA---TAT 72502 || ||||| | || | |||| |||| ||||| ||||| || | ||| | ||| Sbjct 1152339 ATGAGTAAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCGATGACACGTTCAATGTTAT 1152281 Query 72503 C-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATC 72561 | || | || || || || |||||||| | ||| ||||| || | ||||| ||| Sbjct 1152280 CACCCCAG----ATACCCACAGCAACACGCATGATCATGTGCTGTGGGCGCTCAACAATC 1152225 Query 72562 TTG 72564 ||| Sbjct 1152224 TTG 1152222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135215111000