Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq272 120 5e-22 seq72 111 2e-19 >seq272 Length=795643 Score = 120 bits (132), Expect = 5e-22 Identities = 201/288 (70%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||| | || || || ||||| | || || |||||||| Sbjct 62685 ATCTGGCAAATGTACAAGAAGCACGAAGCTTCTTTCTGGACTGCTGAGGAAATCGATCTG 62744 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | || || ||| || ||||| | || | || Sbjct 62745 TCCAAGGATCTCCACGACTGGCACACCCGCATGAACGATGACGAGCGCTACTTCGTCTCT 62804 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| || | |||||||| || | ||| ||||| || ||||| || || || ||||| || Sbjct 62805 CACGTTCTTGCCTTCTTCGCTGCCTCTGATGGCATTGTCAATGAGAACCTGGTTGA-GCG 62863 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||| ||| | ||||| |||| |||||| ||||||||||| |||||||| Sbjct 62864 CTTCAGCGCTGAGGTCCAGATTCCTGAGGCTCGGTGCTTCTACGGATTCCAGATCATGAT 62923 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 |||||| | |||||||| | ||||| || || |||| ||||| Sbjct 62924 GGAGAACATCCACTCGGAGACCTACTCCCTCCTCATCGACACATACAT 62971 Score = 113 bits (124), Expect = 7e-20 Identities = 330/507 (65%), Gaps = 15/507 (3%) Strand=Plus/Plus Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 || || | ||| || || ||||| | |||| ||||| ||||| | ||| | || || Sbjct 63070 GTTCCCTGTATCCGCAAGAAGGCCGAGTGGGCAATTCGCTGGATTCAGGACAAGAAATCC 63129 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 | | ||| | | || || || ||||| ||||| |||||||||||||| ||| | Sbjct 63130 ACATTCGCTCAGCGTCTTGTTGCCTTCGCTGCCGTTGAGGGCATCTTCTTCAGCGGTGCT 63189 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 || || ||||||| ||| | |||||||| || || ||||| || || || | ||| Sbjct 63190 TTCGCTTCCATCTTCTGGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAAC 63249 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAAC 125591 ||| | || || || |||||||| || ||| |||||| || ||||| | || Sbjct 63250 GAGCTGATCTCCCGTGACGAGGGTCTTCACACTGACTTCGCTTGCCTACT------CCAC 63303 Query 125592 TATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCAT---CAACATTGTAACCGAT 125648 | | | | | || | ||| | | ||||||| | ||| | || || Sbjct 63304 TCCCACCTAAACAATCGC---GCAAGCAAGG---AGGTCATTGAGAGCATCATCACTGAC 63357 Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708 ||||| | || || | ||||| | ||||| | || || | |||| | |||||| Sbjct 63358 GCCGTCACCATTGAGAAGGAGTTCTTGACCGAGGCTCTTCCTTGCGCCATGCTGGGCATG 63417 Query 125709 AACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG 125768 ||| ||| || ||| |||| || |||||||| || || ||||| ||| | | Sbjct 63418 AACGCCAACCTTATGAAGCAGTATATCGAGTTTGTTGCCGACCGTCTTCTGGTTGCTCTC 63477 Query 125769 ATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTA 125828 | | |||| | ||||| | | || ||||| || |||||| | ||| || || Sbjct 63478 GGTAACGACAAGGTGTACAAGTCGACTAACCCCTTCGACTTCATGGAGAACATTTCCCTT 63537 Query 125829 GAGGGTAAGACCAACTTTTTCGAGAAG 125855 | || ||||||||||| ||||||||| Sbjct 63538 GGCGGCAAGACCAACTTCTTCGAGAAG 63564 >seq72 Length=1307737 Score = 111 bits (122), Expect = 2e-19 Identities = 370/568 (65%), Gaps = 6/568 (1%) Strand=Plus/Plus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCAC 96864 ||| ||||||| ||| ||| | | || ||||| || ||| ||| || || || Sbjct 1152531 AACCAACGGCACATCCAATGGAATCATCCCCATGCTGCGAGTGTTCAACAACACTGCCA- 1152589 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||| ||| ||||| ||||| || || || || || | || |||| | || || | Sbjct 1152590 GATATGTTGATCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCTATCTATCTCGAGCCCT 1152649 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||| | || || || || || | || | || || || || |||||| | Sbjct 1152650 GGCACTCTGATGTCTTCGAGTTCCTGGATCTTCGAAAGAATCACGGAAAGGAAGAGATCC 1152709 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | || | ||| |||| || || ||| | || ||| | |||||||||||||| | Sbjct 1152710 GTGCACGAGACCTGTTCCTAGCTCTATGGATCCCTGATCTCTTCATGAAGCGCGTTGAGA 1152769 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 | | |||||| || |||||||| || || || || ||| | || |||| | Sbjct 1152770 AGAACGAGAACTGGACTCTCATGTGCCCTAACGAGTGCCCTGGCCTGGCTGACTGCTACG 1152829 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGA 97163 |||| |||||||||||| ||| | || ||| | ||||| || ||| |||||| Sbjct 1152830 GCGAGGAGTTTGAGGCCCTTTACGAGAAGTATGAGAAGGAGGGTCGTGGTCGTCAGACGA 1152889 Query 97164 GTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 || ||| | |||| |||||| | | || | || || |||||||| | || Sbjct 1152890 -TCCGTGC-CCAGAAGCTGTGGTACTCGATTCTCGAAGCCCAAACCGAGACTGGTAACCC 1152947 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 | ||| || ||||||||| | || || || |||||||| || |||| || || Sbjct 1152948 CTTCATGCTTTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACCTGGGTACTAT 1153007 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342 | |||||||||| ||||| || ||| | || ||| | |||| || ||| || || Sbjct 1153008 CCGCAGCTCCAATCTTTGCACTGAGATTATTGAATACTGCGCTCCCGATGAGGTTGCTGT 1153067 Query 97343 TTGCGTTCTGGCATCGGTCAATCTGCCC 97370 |||| ||||| ||| | ||||||| Sbjct 1153068 TTGCAACCTGGCTTCGCTGGCTCTGCCC 1153095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054799961000