Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq226 109 9e-20 seq2 107 3e-19 >seq226 Length=1294123 Score = 109 bits (120), Expect = 9e-20 Identities = 87/102 (85%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||| ||||| |||| Sbjct 1168891 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACAAAGCCCGCTA 1168833 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| ||||| |||||||||||||| ||||||||| |||||| Sbjct 1168832 TCCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 1168791 >seq2 Length=58610 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| | | || || |||||||| || ||||||||||| ||||| Sbjct 16136 GCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 16194 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| |||||| Sbjct 16195 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 16235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074765704175