Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq72 150 2e-31 seq272 98.7 1e-15 >seq72 Length=1307737 Score = 150 bits (166), Expect = 2e-31 Identities = 463/705 (66%), Gaps = 26/705 (4%) Strand=Plus/Minus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | || ||||| | | ||| | ||| | || || || ||||| Sbjct 1152812 CCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATG 1152753 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 ||||||||||| ||||| ||||||| || || |||| | | || || ||||| Sbjct 1152752 AAGAGATCAGGGATCCATAGAGCTAGGAACAGGTCTCGTGCACGGATCTCTTCCTTTCCG 1152693 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||||| |||||| |||||| | | | |||||| ||||| || || | || || Sbjct 1152692 TGATTCTTTCGAAGATCCAGGAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATA 1152633 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | ||||| || ||||| || |||||||| | ||||| || ||||| || | Sbjct 1152632 GCAAAGGCACCAGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCAGTGTTGTTGAAC 1152573 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 |||| || ||| || || || || || ||| | || ||||| |||| || || || Sbjct 1152572 ACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTTCCGGCAATGTACGAGCCT 1152513 Query 63468 CTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 | |||||||| || ||| ||||| || || |||||||| || ||||| | | Sbjct 1152512 GTAGCACGAATGCGGTGAACGTTG--AGACCGATACCTCCTGCCATCTTTGAGATCATGG 1152455 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 | || || | || || |||||||| || ||||| ||||| |||| | | || | Sbjct 1152454 CACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGA 1152395 Query 63586 AACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63641 | || || | | ||| | || || || ||||| || | || |||||||| Sbjct 1152394 AGCATGATGAGA---GCTGA-GCCTGGGGGGTACCGGCATTGAAGAGAGTGGGAGAAGCA 1152339 Query 63642 TGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTA---TATC 63697 || ||||| | || | || | |||| ||||| ||||| || | || | |||| Sbjct 1152338 TGAGTAAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCGATGACACGTTCAATGTTATC 1152280 Query 63698 -CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 63756 || | || || || || |||||||| | ||||||||| || | ||||| |||| Sbjct 1152279 ACCCCAG----ATACCCACAGCAACACGCATGATCATGTGCTGTGGGCGCTCAACAATCT 1152224 Query 63757 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-- 63814 || ||| | || | | ||||| |||| || || ||||| || || | || Sbjct 1152223 TGCCGTTGAGCTTGAGGAGATAGGAACGCTCCAGTGTCTTGAAACCGAAGTACTGATAGT 1152164 Query 63815 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 ||||| ||||| || || | ||| | |||| || | ||||| Sbjct 1152163 TGAAA--TCTCGGTCATAGACAATGGCAGAGTCCAGCTCGTCCTT 1152121 >seq272 Length=795643 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| || ||| ||||||||||| | || || |||||||| || ||||| Sbjct 63293 CAAGCGAAGTCAGTGTGAAGACCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGA 63234 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || |||||||| || | ||| || ||||||||||| | || |||||| Sbjct 63233 CCAGGCATCAGACCACGCTTCTTCAACCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAG 63174 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAG 33452 || || || || ||||| ||||||| ||| Sbjct 63173 ATGCCCTCAACGGCAGCGAAGGCAACAAG 63145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943501251000