Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq72 322 1e-82 >seq72 Length=1307737 Score = 322 bits (356), Expect = 1e-82 Identities = 1119/1709 (65%), Gaps = 78/1709 (5%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTA----TCAATGGTGATATTGT 363446 ||||| | ||||| ||||| | | |||||||| | |||| || | ||||| Sbjct 1152175 TTCGGTTTCAAGACACTGGAG----CGTTCCTATCTCCTCAAGCTCAACGGCAAGATTGT 1152230 Query 363447 TGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATG---T 363503 ||| ||||| ||||| ||| | |||||||||||| | |||||| || ||| | Sbjct 1152231 TGAGCGCCCACAGCACATGATCATGCGTGTTGCTGTGGGTATC---TGGGGTGATAACAT 1152287 Query 363504 TGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACG 363561 ||| | || || || || || || | | || | | || || || || || | Sbjct 1152288 TGAACGTGTCATCGAGACCTACAA-CTAC-ATGTCCAACAAGTTCTTTACTCATGCTTCT 1152345 Query 363562 CCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAA 363621 || || | | |||||| || || | | | ||| | || || ||||| ||| | | Sbjct 1152346 CCCACTCTCTTCAATGCCGGTACCCCCCAGGCTCAGCTCTCATCATGCTTCCTTGTCGAT 1152405 Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| || ||| || ||||||| || || || |||| ||||| | || || Sbjct 1152406 ATGAAGGATGACAGCATTGACGGTATCTACGATACTCTCAAGACCTGTGCCATGATCTCA 1152465 Query 363682 AAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACA 363739 |||| ||||| || || ||| | | || || || ||||||| |||| || ||| Sbjct 1152466 AAGATGGCAGGAGGTATCGGTCTCAACGTTC-ACCGCATTCGTGCTACAGGCTCGT-ACA 1152523 Query 363740 TTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT 363798 || ||| || | || | | || ||||| | | |||||||| || ||||| |||| Sbjct 1152524 TTGCCGGAACCAACGGCACA-TCCAATGGAATCATCCCCATGCTGCGAGTGTTCAACAAC 1152582 Query 363799 ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTC 363858 ||||| || || || || |||||||| |||||| || || |||||||| |||||| Sbjct 1152583 ACTGCCAGATATGTTGATCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCTATCTATCTC 1152642 Query 363859 GAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGAAAAGA 363917 ||||| || | ||| | || ||||| || || || || || || ||| ||||| || Sbjct 1152643 GAGCCCTGGCACTCTGATGTCTTCGAGTTCCTGGATCTTCGAAAGAATCAC-GGAAAGGA 1152701 Query 363918 GGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCG 363977 || | |||||||| || |||||| || || ||| | |||| | || |||||||| Sbjct 1152702 AGAGATCCGTGCACGAGACCTGTTCCTAGCTCTATGGATCCCTGATCTCTTCATGAAGCG 1152761 Query 363978 CGTGGAG--GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC 364035 ||| ||| | | | |||| ||| | ||| | ||||| |||| || || || || | Sbjct 1152762 CGTTGAGAAGAACG--AGAACTGGACTCTCATGTGCCCTAACGAGTGCCCTGGCCTGGCT 1152819 Query 364036 GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCT 364095 || | || || || | || || || ||||| |||||||| |||||| | | Sbjct 1152820 GACTGCTACGGCGAGGAGTTTGAGGCCCTTTACGAGAAGTATGAGAAGGAGGGTCGTGGT 1152879 Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 ||| |||| || | || |||||||| |||| | || | || | || | ||||| Sbjct 1152880 CGTCAGACGATCCGTGCCCAGAAGCTGTGGTACTCGATTCTCGAAGCCCAAACCGAGACT 1152939 Query 364156 GGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTT 364215 || | |||| ||| | ||||| ||| | |||||||| ||| ||||||| || |||| Sbjct 1152940 GGTAACCCCTTCATGCTTTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACCTG 1152999 Query 364216 GGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGA 364274 ||||| | || |||| ||| || || || ||||||||||||||| ||||||||| || Sbjct 1153000 GGTACTA-TCCGCAGCTCCAATCTTTGCACTGAGATTATTGAATACTGCGCTCCCGATGA 1153058 Query 364275 GACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGT---TTGTAAAAGATG-GTA 364330 | ||| || || ||||| || ||| | || || || || | ||| | || | | Sbjct 1153059 GGTTGCTGTTTGCAACCTGGCTTCGCTGGCTCTGCCCGCCTACGTTGATTACGACGAGGG 1153118 Query 364331 CTTTTGACCAC---CAGCATCTTTATGACGTAAC-----CTATCATGCTACTTGCAATCT 364382 || | || || || | || | || || || |||| ||| | || || Sbjct 1153119 CTGCT-ACAACTTTAAGAAGCTCCACGAAGTTACACGGGTTATCGTGC-----GTAACCT 1153172 Query 364383 CGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAAT 364437 || | ||||| || || || || ||| || || || ||| || Sbjct 1153173 GAACCGTATCATCGATGTCAACTACTACCCCGTTCAGGAGGCACGCAACAGC-----AAC 1153227 Query 364438 ATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTC 364497 ||||||||||| || |||||||||||||| ||||| || || || | || || |||| Sbjct 1153228 ATGCGTCATCGACCCATTGGTCTTGGTGTTCAGGGTCTTGCAGATGCATTCTTG--GCTC 1153285 Query 364498 AA--GATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAA 364555 | ||| | || || |||||||| |||||| ||||| ||| ||||||| || || | Sbjct 1153286 TACGCATGCCTTTCGAGTCGCCTGAGGCTCGTCAGCTAAACAAGCAGATCTTCGAGACTA 1153345 Query 364556 TGTATTTTGCCGCAATGACTG-CTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCT 364614 | || |||||| | |||| | | || | | | || | ||| || ||| Sbjct 1153346 TCTACCATGCCGCCCTTACTGAGTCCATGGAACTCGCGAAGGAGCAA-GGTCCCTACCAG 1153404 Query 364615 ACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACG 364674 || | |||| ||||| ||| |||||| | ||||| || | ||||||||||| Sbjct 1153405 ACCTTCAAGGGATCCCCAGCTTCAGAGGGAATCCTTCAGTTCGACATGTGGAATGTCACC 1153464 Query 364675 CCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGC 364734 || |||| || ||| | ||||| || || || | | ||| |||| |||| ||| Sbjct 1153465 CCCTCTGACCTTTGGGAGTGGGAGACCCTTCGAGAGCAGATCAAGGAGCACGGTATCCGC 1153524 Query 364735 AAC--TC-CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 ||| || ||||| || || ||||| || || ||| | |||||| | || ||| Sbjct 1153525 AACAGTCTGCTCGT---GGCCCCTATGCCTACCGCCAGTACCTCTCAGATCTTAGGCAAC 1153581 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 || || |||||||| || | ||| || | || || || || ||||| | ||||| Sbjct 1153582 AATGAATGCTTCGAGCCCTACACATCAAACATCTACTCCCGACGTGTTCTGGCTGGAGAG 1153641 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGAC 364911 || | ||| || || | || | || |||||| || || ||||| || Sbjct 1153642 TTCCAGGTCGTCAACCCCTGGCTCTTGAAAGATCTTGTTGAGTTGGGCTTGTGGTCCGAT 1153701 Query 364912 AGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCA 364971 |||||||||| ||||| || | | ||||| | || |||||||| | || Sbjct 1153702 GCCATGAAGAACCGAATCATTGCTGAGCAAGGTTCGATCCAAAACATTCCCAACATCCCT 1153761 Query 364972 GAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTG-- 365029 || || || ||| || | ||||| ||||| ||||| ||||| | | || ||| Sbjct 1153762 GATGACCTCAAGGCTCTCTACAAGACCGTCTGGGAGATTTC---TCAACGTCAAGTTGTG 1153818 Query 365030 -ATATGGCGGCCGATCGCGGTGCTTTTAT 365057 | ||||| |||||||| |||||||| || Sbjct 1153819 CAGATGGCCGCCGATCGAGGTGCTTTCAT 1153847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303345667871450