Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq273 131 2e-25 seq322 123 2e-23 seq72 109 5e-19 seq200 84.2 2e-11 >seq273 Length=2741725 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || |||||||| ||| Sbjct 1841361 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1841420 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| | || | ||||| ||||| |||||| Sbjct 1841421 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGGG 1841480 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| || ||| ||||| | || | ||||| | ||||||| Sbjct 1841481 ATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 1841540 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGAC 131237 |||| ||| | ||| || ||||| || || || ||||||||||||||||| Sbjct 1841541 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGAC 1841590 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| |||||||| || |||||||| ||| Sbjct 1841075 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1841134 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | ||||| ||||| |||||| Sbjct 1841135 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGG 1841194 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||| | | || | || || | || |||| Sbjct 1841195 ATACCCTCCTTGTCCTGAATCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGACC 1841254 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| ||| | || || ||||| || || || |||| Sbjct 1841255 TCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGA 1841291 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | || | ||| |||||||| || |||||||| || Sbjct 1840846 GCCGCCACGGAGACGGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1840905 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || ||| || |||||||| || ||| |||| | |||||||||||| ||||| Sbjct 1840906 AAGGGTACGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 1840965 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || ||| ||| ||| | | || | || || | || |||| Sbjct 1840966 AATACCCTCCTTATCCTGGATCTTCGACTTCACATTGTCAATCGTGTCCGATGATTCGAC 1841025 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || || || || |||||||||||||| Sbjct 1841026 TTCCAGTGTGATAGTCTTTCCCGTGAGTGTCTTGACGAAAATCTGCAT 1841073 >seq322 Length=957674 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| || || || | || | ||| |||||||| || |||||||| ||| Sbjct 93489 GCCACCACGCAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 93548 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| | ||||| ||||| || || Sbjct 93549 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGG 93608 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 93609 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 93668 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || || || || |||||||||||||| Sbjct 93669 CTCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 93716 >seq72 Length=1307737 Score = 109 bits (120), Expect = 5e-19 Identities = 594/938 (63%), Gaps = 24/938 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| ||||| || |||| ||||| || | || | ||| || ||| |||| Sbjct 1153655 TTGACGACCTGGAACTCTCCAGCCAGAACACGTCGGGAGTAGATGTTTGATGTGTAGGGC 1153596 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || | || || ||||| | ||| |||| ||| | ||||| ||||| ||||| Sbjct 1153595 TCGAAGCATTCATTGTTGCCTAAGATCTGAGAGGTACTGGCGGTAGGCATAGGGGCCACG 1153536 Query 145178 A--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | | | || ||||| | ||||||| |||||| | || || || |||| |||| Sbjct 1153535 AGCAGACTG--TTGCGGATACCGTGCTCCTTGATCTGCTCTCGAAGGGTCTCCCACTCCC 1153478 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC-GCTGGCGGGG 145294 | || || || | || | |||||||||| |||| | || ||||| | | |||| Sbjct 1153477 AAAGGTCAGAGGGGGTGACATTCCACATGTCGAACTGAAGGATTCCCTCTGAAGCTGGGG 1153418 Query 145295 CTGCCTTGAAAGGAACTGTA---AC--TGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCT 145349 | ||||| |||| ||| || ||| || || ||||| || || | | || Sbjct 1153417 ATCCCTTG-AAGGTCTGGTAGGGACCTTGCTCC-----TTCGCGAGTTC-CA--TGGACT 1153367 Query 145350 C---CAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCAT 145406 | || ||| | || || |||||| || ||| |||| ||| | || ||| Sbjct 1153366 CAGTAAGGGCGGCATGGTAGATAGTCTCGAAGATCTGCTTGTTTAGCTGACGAGCCTCAG 1153307 Query 145407 CGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGC 145466 |||| | |||||||| || | || ||||| || || ||||| | || | | Sbjct 1153306 GCGACTCGAAAGGCATGCGTAGAGCCAAGAATGCATCTGCAAGACCCTGAACACCAAGAC 1153247 Query 145467 CGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGG 145525 | ||||| ||||| ||||||||| | | ||| || | || || | | | || Sbjct 1153246 CAATGGGTCGATGACGCATGTTGCTGTTGCGTGCCTCCTGAACGGGGTAGTAGTTGAC-A 1153188 Query 145526 TCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAG 145585 ||||| || |||| ||| ||||| | ||| ||||| | | | ||| | |||| Sbjct 1153187 TCGATGATACGGTTCAGGTTACGCACGATAACCCGTGTAACTTCGTGGAGCTTCTTAAAG 1153128 Query 145586 TCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAA 145645 | | | ||||||| | || || | || | ||| |||| || ||| Sbjct 1153127 TTGTAGCAGCCCTCGTCGTAATCAACGTAGGCGGGCAGAGCCAGCGAAGCCAGGTTGCAA 1153068 Query 145646 ACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTG 145705 || || ||| |||| ||| ||||| | ||||| | ||| | |||| | | Sbjct 1153067 ACAGCAACCTCATCGGGAGCGCAGTATTCAATAATCTCAGTGCAAAGATTGGAGCTGCGG 1153008 Query 145706 ATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTAC 145765 || || ||||| || | ||| || || || | |||||| || |||||||| |||||| | Sbjct 1153007 ATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAAAGCATGAAG 1152948 Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACC 145825 || |||||||| || | || | || | || | ||| ||||| | | Sbjct 1152947 GGGTTACCAGTCTCGGTTTGGGCTTCGAGAATCGAGTACCACAGCTTCTGGGCACGGATC 1152888 Query 145826 TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCG 145885 ||| | || ||||| | || || ||| ||| || |||||||| | ||| Sbjct 1152887 GTCTGACGACCACGACCCTCCTTCTCATACTTCTCGTAAAGGGCCTCAAACTCCTCGCCG 1152828 Query 145886 TAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCG 145945 ||||| || | |||||| || |||| ||| || ||||| || | ||| |||| Sbjct 1152827 TAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTC 1152768 Query 145946 TTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGC 145983 | ||||||| ||| || | ||| || | ||| || || Sbjct 1152767 TCAACGCGCTTCATGAAGAGATCAGGGATCCATAGAGC 1152730 >seq200 Length=1806557 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | |||||| ||||| ||||||||||| ||| ||| Sbjct 889114 CCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 889173 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||| ||||| || || ||||| || ||||| || || ||||| | | Sbjct 889174 TCAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 889233 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||| | ||| || || || || || || |||| Sbjct 889234 CAATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 889293 Query 131225 A 131225 | Sbjct 889294 A 889294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472009997424000