Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq396 140 2e-28 seq381 122 6e-23 seq272 109 4e-19 >seq396 Length=970 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 845 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 904 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 905 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 939 >seq381 Length=138816 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct 112005 AAGCCCGTTCCCTTGGCTGTAGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 111946 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||| ||| ||||||||||||| |||| Sbjct 111945 TAATCCATTCATACGCATCACTAATTAGATAACGA 111911 >seq272 Length=795643 Score = 109 bits (120), Expect = 4e-19 Identities = 200/293 (68%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 ||||| ||||| |||||||| ||| ||| || | ||| | || || || |||||| Sbjct 118702 GACGCCTTCTATCGCTACAAGATGGAGCGTCTCCAGACAAAGATTGAAGGCAAAGGAAAC 118643 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 ||||| |||||||| |||||||| |||| || || || | |||| ||||||| | Sbjct 118642 GGTATCAAAACCGTTGTTGTCAACTTGCCCAGCGTTGCCCAGTCTCTCGCTCGCCCTGGC 118583 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 || | | || || ||||| | ||||| || || ||||| | | || | ||| Sbjct 118582 GCCCATGTCATCAAGTACTTCGGTTTTGAACTGGGTGCCCAGACTAATATGGACCCCAAG 118523 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 | || || | ||| | ||||| | ||| || | |||||||| || ||| || || Sbjct 118522 GATGATCGATGGATCATCAACGGTGCTCATGACGCAGCCAAGCTTCAAGACCATCTCGAT 118463 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||||||| ||||||||| || || | || | ||||| |||||||| Sbjct 118462 GGCTTTATCAACAAGTTTGTCCTCTGCAAAAAGTGTAAGAACCCAGAGACCGA 118410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945260969725