Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq72 168 8e-37 >seq72 Length=1307737 Score = 168 bits (186), Expect = 8e-37 Identities = 470/710 (66%), Gaps = 26/710 (4%) Strand=Plus/Minus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| ||||| || || | || ||||| | | ||| | ||| | || || || | Sbjct 1152817 CCAGGCCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCT 1152758 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| ||||||||||| ||||| ||||||| || || |||| | | || || | Sbjct 1152757 TCATGAAGAGATCAGGGATCCATAGAGCTAGGAACAGGTCTCGTGCACGGATCTCTTCCT 1152698 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 |||| ||||||| |||||| |||||| | | | |||||| ||||| || || | | Sbjct 1152697 TTCCGTGATTCTTTCGAAGATCCAGGAACTCGAAGACATCAGAGTGCCAGGGCTCGAGAT 1152638 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | || || | | ||||| || ||||| || |||||||| | ||||| || ||||| | Sbjct 1152637 AGATAGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCAGTGTTGT 1152578 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | | |||| || ||| || || || ||||||||||| || ||||| || | || || Sbjct 1152577 TGAACACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTTCCGGCAATGTACG 1152518 Query 63318 TTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 || | |||||||| || ||| ||||| || || |||||||| || ||||| Sbjct 1152517 AGCCTGTAGCACGAATGCGGTGAACGTTG--AGACCGATACCTCCTGCCATCTTTGAGAT 1152460 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | || || || | ||||| ||||| || || || || |||||| |||| | | Sbjct 1152459 CATGGCACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGAC 1152400 Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAG 63491 || || || || | | ||| | || || || ||||| || | || |||| Sbjct 1152399 AAGGAAGCATGATGAGA---GCTGA-GCCTGGGGGGTACCGGCATTGAAGAGAGTGGGAG 1152344 Query 63492 AAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTA-- 63548 |||| |||||||| | || | || | |||| ||||| ||||| || | || | Sbjct 1152343 AAGCATGAGTAAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCGATGACACGTTCAATG 1152285 Query 63549 -TATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63606 |||| || | || || || || |||||||| | ||||||||| || | ||||| Sbjct 1152284 TTATCACCCCAG----ATACCCACAGCAACACGCATGATCATGTGCTGTGGGCGCTCAAC 1152229 Query 63607 GATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 63666 |||||| ||| | || | | ||||| |||| || || ||||| || || | Sbjct 1152228 AATCTTGCCGTTGAGCTTGAGGAGATAGGAACGCTCCAGTGTCTTGAAACCGAAGTACTG 1152169 Query 63667 GTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 || ||||| ||||| || || | ||| | |||| || | ||||| Sbjct 1152168 ATAGTTGAAA--TCTCGGTCATAGACAATGGCAGAGTCCAGCTCGTCCTT 1152121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628237810000