Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq273 93.3 4e-14 seq322 82.4 7e-11 >seq273 Length=2741725 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| |||| || ||||| ||| Sbjct 1841587 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 1841528 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || ||| | || | ||| ||||| || || || || |||||| Sbjct 1841527 GATACCATCGA--CAATGTCAAGTCGAAGATTCAG-GACAAGGAGGGAATCCCTCCTGAC 1841471 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | ||||| || || || || | || |||| ||||| | ||| ||| Sbjct 1841470 CAACAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTAC 1841411 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || || || || || ||||| || || Sbjct 1841410 AACATCCAGAAGGAGTCCACCCTCCA 1841385 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || ||||| | ||||| || | ||||| |||| || || || |||||||| ||||| Sbjct 1841289 GTCAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAATCTTCTGACACCATCGAC 1841230 Query 25071 TCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTAT 25129 | ||| | || | ||| ||||| || || || || || ||||||||||| | || Sbjct 1841229 AACGTTAAGTCGAAGATTCAG-GACAAGGAGGGTATCCCTCCCGACCAACAGCGCCTGAT 1841171 Query 25130 TTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGA 25189 ||||| ||||| || | || |||| ||||| | ||| ||||| || || || || Sbjct 1841170 CTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGA 1841111 Query 25190 ATCCACGCTACATTTAGTGCT 25210 ||||| || || || ||||| Sbjct 1841110 GTCCACCCTCCACTTGGTGCT 1841090 >seq322 Length=957674 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | ||||| |||| |||||||| || Sbjct 93716 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 93657 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || || |||||| Sbjct 93656 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAA 93597 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || || | ||||| | ||| ||||| Sbjct 93596 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 93537 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 93536 ATCCAGAAGGAGTCCACCCTCCA 93514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325491437125