Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq322 123 2e-23 seq273 120 3e-22 seq200 111 1e-19 >seq322 Length=957674 Score = 123 bits (136), Expect = 2e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | || || || || |||| || || ||||| | Sbjct 93719 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACTATCACCCTCGAGGTGGAGTCT 93660 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| | |||| || || || ||||||||||| || || ||||| Sbjct 93659 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 93600 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| || || || || |||||||| ||| | ||||| ||||||| ||||||| ||| Sbjct 93599 CAACAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 93540 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || |||||| Sbjct 93539 AACATCCAGAAGGAGTCCACC 93519 >seq273 Length=2741725 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || ||| | | || ||| | ||| | | || Sbjct 1841277 ACCGGCAAGACTATCACCCTCGAGGTCGAATCTTCTGACACCATCGACAACGTTAAGTCG 1841218 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| |||||||||||||| || ||||| ||||| || || || ||||| ||||| Sbjct 1841217 AAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAACAGCGCCTGATCTTTGCTGGCAAG 1841158 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||||||| ||||||| |||||||| || || || |||||| | || Sbjct 1841157 CAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 1841098 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || | || |||| || ||| Sbjct 1841097 TTGGTGCTCCGTCTGCGTGGTGGT 1841074 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || |||| || || || || | | Sbjct 1841587 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 1841528 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || ||||| ||||||||||| || || || || ||| Sbjct 1841527 GATACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATCCCTCCTGACCAA 1841468 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | |||||| ||||||| ||||||| |||||| Sbjct 1841467 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 1841408 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 1841407 ATCCAGAAGGAGTCCACC 1841390 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || |||| || ||||| ||| | | Sbjct 1841073 ATGCAGATTTTCGTCAAGACACTCACGGGAAAGACTATCACACTGGAAGTCGAATCATCG 1841014 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || || || |||||||||||||| || || || Sbjct 1841013 GACACGATTGACAATGTGAAGTCGAAGATCCAGGATAAGGAGGGTATTCCTCCTGACCAG 1840954 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | || || ||| ||| | || || |||||| Sbjct 1840953 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAAGACGGCCGTACCCTTTCTGACTACAAC 1840894 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 1840893 ATCCAGAAGGAGTCCACC 1840876 >seq200 Length=1806557 Score = 111 bits (122), Expect = 1e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || || |||| ||| | ||| || |||| Sbjct 889279 ACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATTGACAATGTCAAGTCC 889220 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| || || ||||| || || || || |||||||| Sbjct 889219 AAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAACAGCGCCTGATCTTCGCCGGCAAG 889160 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||| | |||||| ||||||| |||| || |||||||| || || Sbjct 889159 CAGCTCGAGGATGGCCGCACCCTCTCAGACTACAACATCCAGAA 889116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725570168375