Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq53 111 3e-19 seq72 93.3 9e-14 seq272 91.5 3e-13 >seq53 Length=845014 Score = 111 bits (122), Expect = 3e-19 Identities = 127/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||||||| | ||| | ||||||| ||||| || ||||| ||||| | Sbjct 795998 CCAACTTCGGTCTGGACGCTGAGCTCGTCTCTCACTCCCGCATGCGTGGTCTGTCTGGTG 796057 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 ||||| ||||| |||| ||| || |||| |||||| | |||||| ||||||| Sbjct 796058 GCCAGCGTGTCAAGACTGTCCTCGCTGCTTGCTC-GTGGCAGCGACCTCACTTGATCGTC 796116 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 || |||||||||||||||||||||||||| || ||| || || ||| Sbjct 796117 CTTGACGAGCCTACCAACTATCTGGACCGTGACTCCCTCGGTGCCCTG 796164 Score = 96.9 bits (106), Expect = 7e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||||||||| |||| ||||| || || || |||| ||||| ||||| ||| Sbjct 794626 GGTGAGGATCTGTGCAACTGCACCTTCTCCCTTGCCTACGGTGCCAAGATCCTGCTGAAC 794685 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| |||| ||||||||||| | || || ||||| ||||||||| || | Sbjct 794686 CAGACCCACCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 794745 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 794746 GGAAAGTCTACTCTGATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 794804 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || || | ||| || | || ||||||||| | ||||| Sbjct 794805 GAGCGAAGTCAAGACTGTCTTCGTCGAGCACGACCTGGACTC 794846 >seq72 Length=1307737 Score = 93.3 bits (102), Expect = 9e-14 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC---C 280232 || |||||||| ||||||||||| |||||||| |||||| | || ||||||||||| | Sbjct 174042 ATCGGACCCAACGGTGCGGGTAAATCTACCCTCATCAAATTGCTCACTGGCGAGACGATC 174101 Query 280233 CAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 | |||| || ||| |||||| ||||| | || || | ||| || ||| Sbjct 174102 CCCAACACT---GGCAAGGTTGAGAAGCACCCCAATCTCCGTATCGGATACATCAAGCAG 174158 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 ||||| | | || | |||| || |||| | ||| |||||||| ||| |||||||| Sbjct 174159 CACGCCCTTGAGCATGTGGAGATGCATTTGGAGAAGACACCTAACCAGTACCTTCAGTGG 174218 Query 280353 CGCTATGC 280360 || || || Sbjct 174219 CGTTACGC 174226 >seq272 Length=795643 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || || || ||||||||||||||||||||| || Sbjct 63560 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAAATGTTCTCCATGAAGTCGAAGGGGTTAGTC 63501 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTAC--GAAGATGCGGTCTGCCACAAACTCCA 251680 | |||||| |||| | || || || || ||||| ||||| || |||||||| | Sbjct 63500 GACTTGTACACCTTGTCGTTACCGAGAGCAACCAGAAGA--CGGTCGGCAACAAACTCGA 63443 Query 251681 GATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGA 251740 |||||| ||| || | | ||||||||| | ||| ||||||| ||||| | Sbjct 63442 TATACTGCTTCATAAGGTTGGCGTTCATGCCCAGCATGGCGCAAGGAAGAGCCTCGGTCA 63383 Query 251741 TGAATTCCTTTTC 251753 ||| ||||| || Sbjct 63382 AGAACTCCTTCTC 63370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830544649475