Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq322 185 2e-41 seq273 176 8e-39 seq53 131 3e-25 seq272 129 1e-24 >seq322 Length=957674 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || |||||||| || |||||||| || |||||| Sbjct 93490 CCACCACGCAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 93549 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | ||||||||||| || Sbjct 93550 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGG 93609 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 93610 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 93669 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 93670 TCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 93716 >seq273 Length=2741725 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || |||||||| || |||||||| || |||||| Sbjct 1841361 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1841420 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | |||||||| || || Sbjct 1841421 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGGG 1841480 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | |||||| |||||||| || | || || || Sbjct 1841481 ATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 1841540 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 1841541 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1841587 Score = 167 bits (184), Expect = 4e-36 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || |||||||| || |||||||| || |||||| Sbjct 1841075 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1841134 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || || | ||||||||||| || Sbjct 1841135 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGG 1841194 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||| ||| ||||||||||| | ||||| || Sbjct 1841195 ATACCCTCCTTGTCCTGAATCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGACC 1841254 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | |||||| || || || |||||||||||||||| Sbjct 1841255 TCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGA 1841291 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || |||||||| || |||||||| || || || Sbjct 1840847 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1840906 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| ||||| | || ||||| || ||| Sbjct 1840907 AGGGTACGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGA 1840966 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || || ||||| | ||| || || || ||||| | |||||| ||| Sbjct 1840967 ATACCCTCCTTATCCTGGATCTTCGACTTCACATTGTCAATCGTGTCCGATGATTCGACT 1841026 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || ||||||||||| ||||||||||| |||||||| Sbjct 1841027 TCCAGTGTGATAGTCTTTCCCGTGAGTGTCTTGACGAAAATCTGCAT 1841073 >seq53 Length=845014 Score = 131 bits (144), Expect = 3e-25 Identities = 672/1048 (64%), Gaps = 64/1048 (6%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||| ||||||| | |||||| |||||| |||||| ||||| ||| |||||| Sbjct 795635 CGCCACTGAATGTACTCGGAGGGGGTGCTGTCCAAGTGGTTATCAATGTGGGCGAAAGCG 795576 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 795575 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 795516 Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || ||||| || || ||||| || ||| |||| || ||||| || || ||||| Sbjct 795515 ATGAGC-TCACCGGTAAGAACGTTGATCAGAGTACTCTTACCGGCACCGTTAGGACCAAT 795457 Query 225160 CACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGG 225217 ||| |||| ||||| || | ||| ||| || | | || | |||||| ||| Sbjct 795456 GACGGCAATACGGGAACCGAGAGAGCA--CTGGAAGGTGATGTCGG---AGATCTG-GGG 795403 Query 225218 CC---AGTTT----GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACG 225264 | || | |||| |||| || | |||| || ||||| Sbjct 795402 CTTGGAGGTACCGGGGTACTGGAAGGACATCTTGGTGGCACGGAGA------ATGGCCTT 795349 Query 225265 GTCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGC 225324 | |||||| | | |||||| ||||| |||||||| ||||| ||| | || | | Sbjct 795348 GGCCTTGGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAAGGAGAACTCGATCTCGGA 795289 Query 225325 GTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGT---CGCTTTGCCACGAAAGCAGACAG 225381 | | || |||||||| || ||| || ||||| ||||| | | ||| Sbjct 795288 GGCACCGAGCTCGTAGTAGGACCTAGCGGAAGGAACACGCTTG---ACGAACTCGGCCAG 795232 Query 225382 GTTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACA 225440 ||| || || | ||||||||| | || |||| || || || ||| | ||| | Sbjct 795231 GTTACCCTTGTAACGCTTGAGCTTGAAGCGCT---CGTAGTGGACGATGTGCTG-GCAGA 795176 Query 225441 CTGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCT 225500 | ||| ||||||| |||||||||||| || |||||||| | | | || | Sbjct 795175 CGTTGTCGAGGAAGCTAGAGTCGTGGGAGACGATGATGGAGG-----TGCAAGGGGAATT 795121 Query 225501 --TGAGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGT 225557 |||||| || | |||||| ||||| | ||||||| ||||| ||||| |||| Sbjct 795120 GATGAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAATGGTTGGTAGGCTCGT 795062 Query 225558 CCAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCC 225617 ||||||||||||| |||| | | || || ||| || |||| |||||||| |||| Sbjct 795061 CCAGAAGCAGGATATCAGGAGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCC 795002 Query 225618 AGCCCCCGGACAGGGAGCCGATTGAAACAG---AGTGCTTAGCT--TCGTCAAAGCCGTA 225672 | || ||||| || ||| || || | ||| | | || ||| |||||| | Sbjct 795001 AACCACCGGAAAG--AGCGGA---AATCTCGCCAGTAATCATCTGCTCGGTGAAGCCGAA 794947 Query 225673 CTCCAGGAGCGTCTGGATAATG-CG--CTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTC 225729 ||| ||| || || | | || || || | | || | | || | | | | | Sbjct 794946 CTCGGTAAGCTGCTTGACGACGTCGTCCTTGGTGGTGGTGACACCAGCCTCCTCGAGCTT 794887 Query 225730 GGACGAGAGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCAC 225789 | | | || |||||| || | ||| | ||| | |||||| || || Sbjct 794886 CTTCATGGTCCACTCGATGGTGGTCATCTCGGTATCAGCAGAGTCCAGGTCGTGCTCGAC 794827 Query 225790 GTACACCGTCCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCG 225848 | | || ||| || | | || | |||||| ||||| | ||| | || || | Sbjct 794826 GAAGACAGTCTTGACTTCGCTCTGCTT-GGGGAAACCCTCGACCTGCTCGTTGTTGATGG 794768 Query 225849 CACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGC 225908 |||| | ||| ||| ||| || | |||||||||||| || ||||| | | || | Sbjct 794767 CACGCATCAGAGTAGACTTTCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCAC 794708 Query 225909 GCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACT 225968 |||||| |||| | || |||||| ||||||||| |||| |||||||||||||| Sbjct 794707 GCTTGAGACGGAGGTGGGTCTGGTTCAGCAGGATCTTGGCACCGTAGGCAAGGGAGAAGG 794648 Query 225969 CGCAATCGCACAGGTCCTCACCCTCCTC 225996 ||| | |||||| |||||||||||||| Sbjct 794647 TGCAGTTGCACAGATCCTCACCCTCCTC 794620 >seq272 Length=795643 Score = 129 bits (142), Expect = 1e-24 Identities = 185/258 (72%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || |||||||||||||| |||||| | Sbjct 63597 CATGACACCGGCCTTCTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCC 63538 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTT-CTCGGCGCCAAACTGCTTGGGGTAAC 10053 ||||||||| |||||||||||| |||||||| ||| | || |||| || || Sbjct 63537 AAGGGAAATGTTCTCCATGAAGTCGAAGGGGTTAGTCGAC-TTGTACACCTTGTCGTTAC 63479 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 |||| || | || ||||| || || |||||||| ||||| |||| |||| | || Sbjct 63478 CGAGAGCAACCAGAAGACGGTCGGCAACAAACTCGATATACTGCTTCATAAGGTTGGCGT 63419 Query 10114 TCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||||||| | |||| ||| || | || ||| | ||| ||||| || ||| ||| | Sbjct 63418 TCATGCCCAGCATGGCGCAAGGAAGAGCCTCGGTCAAGAACTCCTTCTCAATGGTGACGG 63359 Query 10174 CTTCCTCGACGATGCTCT 10191 | || || |||||||| Sbjct 63358 CGTCAGTGATGATGCTCT 63341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921616927867000