Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq72 206 5e-48 seq272 197 3e-45 >seq72 Length=1307737 Score = 206 bits (228), Expect = 5e-48 Identities = 879/1361 (65%), Gaps = 47/1361 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTT-GCTGCTGAGCG 244148 ||| || ||||| |||||||| | ||| || || || ||||| ||| | || || | Sbjct 1153656 GTTGACGACCTGGAACTCTCCAGCCAGAACACGTCGGGAGTAGATGTTTGATGTGTAG-G 1153598 Query 244149 GCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACA 244208 |||||| || || ||||||| | ||||| | || || || || ||||| || | || Sbjct 1153597 GCTCGAAGCATTCATTGTTGCCTAAGATCTGAGAGGTACTGGCGGTAGGCATAGGGGCCA 1153538 Query 244209 CCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 | ||||||||||| | | |||||| || ||| | || || | ||| |||| Sbjct 1153537 CGAGCAGACTGTTGCGGATACCGTGCTCCTTGATCTGCTCTCGAAGGGTCTCCCACTCCC 1153478 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCT-TG 244327 | | | | ||| || ||| ||||||||| ||||| || | |||| || Sbjct 1153477 AAAGGTCAGAGGGGG---------TGACATTCCACATGTCGAACTGAAGGATTCCCTCTG 1153427 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACA-GCT 244386 | |||| | |||| | ||||| |||||||||| | || || || || || | Sbjct 1153426 AAGCTGGGGAT-CCCTTGAAGGTCTGGTAGGGACCTTGCTCCTTCGCGAG-TTCCATGGA 1153369 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 ||| |||||||| | |||||| |||||||||||| |||||| | | || |||| Sbjct 1153368 CTCAGTAAGGGCGGCATGGTAGATAGTCTCGAAGATCTGCTTGTTTAGCTGACGAGCCTC 1153309 Query 244447 -GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 | || | ||| || |||| | || ||| | || || || ||||| || || | Sbjct 1153308 AGGCG-ACTCGAAAGGCATGCGTAGAGCCAAGAATGCATCTGCAAGACCCTGAACACCAA 1153250 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTG 244564 || ||||||| || ||| ||||| | || || || | | |||||||| ||||| Sbjct 1153249 GACCAATGGGTCGATGACGCATGTTGCTGTTGCGTGCCTCCTGA-ACGGGGTAGTAGTTG 1153191 Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGA 244624 | ||||| | ||| ||||| || ||| | || || ||| ||| || | Sbjct 1153190 ACATCGATGATACGGTTCAGGTTACGCACGATAACCCGTGTAACTTCGTGGAGCTTCTTA 1153131 Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684 |||| ||| | || ||||| || | ||| || | || || || | Sbjct 1153130 AAGTTGTA---GCAGC---CCTCGTCG----TAATCA--ACGTAGGCGGGCAGAGCCAGC 1153083 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 ||||||||||| || || ||||| || | | ||| | | |||||| ||||| Sbjct 1153082 GAAGCCAGGTTGCAAACAGCAACCTCATCGGGAGCGCAGTATTCAATAATCTCAGTGCAA 1153023 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 || || || ||| || ||||||| || || ||| ||| |||||| || ||| Sbjct 1153022 AGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCC 1152963 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 ||||| ||||||||||| || |||||| ||||| |||| | || ||| || Sbjct 1152962 TTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGAATCGAGTACCACAGC 1152903 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCC 244924 | | || || |||| ||| | ||||| ||| || ||| |||||| Sbjct 1152902 TTCTGGGCACGGATCGTCTGACGACCACGACCCTCCTTCTCATACTTCTCGTAAAGGGCC 1152843 Query 244925 TCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTC 244984 || ||||| ||| || || | ||||| |||||| |||||||||||| || Sbjct 1152842 TCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAGAGTC 1152783 Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044 || | || | || || | || ||||||||| || |||||||| || || |||| Sbjct 1152782 CAGTTCTCGTTCTTCTCAACGCGCTTCATGAAGAGATCAGGGATCCATAGAGCTAGGAAC 1152723 Query 245045 AGGTCCCTGGTCCTCTG--CTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCA 245101 ||||| | || | | | ||| ||| || ||| ||||| | || |||| || || Sbjct 1152722 AGGTCTC--GTGCACGGATCTCTTCCTTTCC-GTGATTCTTTCGAAGATCCAGGAACTCG 1152666 Query 245102 AAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCT 245161 ||||| || |||||||||||| | |||| ||| | ||| || || ||||||||||| Sbjct 1152665 AAGACATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGGCGCTTGTTGCCA 1152606 Query 245162 CCCTGGTCCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 ||||| | || ||| ||| | || | |||||| | ||||| | || | || || | Sbjct 1152605 CCCTGAT-CAACAT-ATCTGGCAGTGTTGTTGAACACTCGCAGCATGGGGATGATTCCAT 1152548 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCC--CTGAGGTTGCTGATGG 245276 | || ||||||||| || ||||| | ||| | || | || ||| | || Sbjct 1152547 TGGATGTGCCGTTGGTTCCGGCAATGTACGAGCCTGTAGCACGAATGCGGTGAACGTTG- 1152489 Query 245277 ACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTA 245336 | || | || || || ||| ||||| | ||| ||| |||||| || || | Sbjct 1152488 --AGACCGATACCTCCTGCCATCTTTGAGATCATGGCACAGGTCTTGAGAGTATCGTAGA 1152431 Query 245337 TGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGG 245396 | || || |||||||| |||||| | || || ||||| || || ||||| | || || Sbjct 1152430 TACCGTCAATGCTGTCATCCTTCATATCGACAAGGAAGCATGATGAGAGCTGAGCCTGGG 1152371 Query 245397 GGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 || | | | ||||| |||||||| || || |||||| Sbjct 1152370 GGGTACCGGCATTGAAGAGAGTGGGAGAAGCATGAGTAAAG 1152330 >seq272 Length=795643 Score = 197 bits (218), Expect = 3e-45 Identities = 510/782 (65%), Gaps = 69/782 (9%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||| |||||||| ||||| |||||||||||||||| | |||| Sbjct 62811 CTTGCCTTCTTCGCTGCCTCTGATGGCATTGTCAATGAGAACCTGGTTGAGCGCTTCAGC 62870 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 ||||| ||| |||||| || ||||||||||| |||||||| || |||||| Sbjct 62871 GCTGAGGTCCAGATTCCTGAGGCTCGGTGCTTCTACGGATTCCAGATCATGATGGAGAAC 62930 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||| || || || |||| |||||| ||| | | |||| Sbjct 62931 ATCCACTCGGAGACCTACTCCCTCCTCATCGACACATACATCAAGGAACAGGCTCAGCGC 62990 Query 42603 AACGGGCTGTTCAAGGCCATGGAGAC--------------------------GATG---- 42632 | |||||||| || || ||||| |||| Sbjct 62991 GAGTACCTGTTCAATGCTATTGAGACTAGTACGTTTTCTCGTGTATACCCCCGATGGCGA 63050 Query 42633 ----------------------CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTG 42670 ||||| ||| |||||||| || ||||| | ||| Sbjct 63051 CCATAGCTAACCATTCTTAGTTCCCTGTATCCGCAAGAAGGCCGAGTGGGCAATTCGCTG 63110 Query 42671 GATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGG 42729 ||| || | | || | || |||| || | || || ||||| | ||||| |||| Sbjct 63111 GATTCAG-GACAAGAAATCCACATTCGCTCAGCGTCTTGTTGCCTTCGCTGCCGTTGAGG 63169 Query 42730 GCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATG 42788 ||||||||||| || || ||||| |||||||||||| | ||| || ||| | |||| Sbjct 63170 GCATCTTCTTCAGCGGTGCTTTCGCTTCCATCTTCTGGTTGAAGAAGCGTGGTCT-GATG 63228 Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTT 42848 || || ||||||||||| ||||| || ||| | | |||||||| || || | ||||| Sbjct 63229 CCTGGTCTCACCTTCTCCAACGAGCTGATCTCCCGTGACGAGGGTCTTCACACTGACTTC 63288 Query 42849 GCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTC---GAAGGAGCGGGTCCGG 42905 || ||||| || ||| |||||| | |||| | | | |||||| | | Sbjct 63289 GCTTGCCTACTCCACTC---CCACCTAA---ACAATCGCGCAAGCAAGGAGGTCATTGAG 63342 Query 42906 GCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG 42965 ||||||||| || ||||| || |||||||||||| | || || | || || Sbjct 63343 AGCATCATCACTGACGCCGTCACCATTGAGAAGGAGTTCTTGACCGAGGCTCTTCCTTGC 63402 Query 42966 TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCAT 43025 || || | ||||||||| | |||| ||| |||| ||| ||| || ||||||| | Sbjct 63403 GCCATGCTGGGCATGAACGCCAACCTTATGAAGCAGTATATCGAGTTTGTTGCCGACCGT 63462 Query 43026 CTCCTG--TGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTA 43083 || ||| ||| | ||| | | | ||||| || | |||||||||||| | Sbjct 63463 CTTCTGGTTGC--TCTCGGTAACGACAAGGTGTACAAGTCGACTAACCCCTTCGACTTCA 63520 Query 43084 TGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACC 43143 |||||||||| || | | |||||||||||||| |||||||||||||||| ||||||| Sbjct 63521 TGGAGAACATTTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGTGACTACC 63580 Query 43144 AG 43145 || Sbjct 63581 AG 63582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944333592986000