Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq272 113 1e-19 seq53 84.2 5e-11 >seq272 Length=795643 Score = 113 bits (124), Expect = 1e-19 Identities = 310/471 (66%), Gaps = 8/471 (2%) Strand=Plus/Plus Query 243287 CATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTT 243346 |||| ||| ||||||| || |||| | |||||| || || | || ||| || Sbjct 63131 CATTCGCTCAGCGTCTTGTTGCCTTCGCTGCCGTTGAGGGCATCTTCTTCAGCGGTGCTT 63190 Query 243347 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 243406 || ||||||| ||| || ||| ||| |||||||||| ||| | || |||| Sbjct 63191 TCGCTTCCATCTTCTGGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACG 63250 Query 243407 AGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGC 243466 || | ||| || |||||||| |||||| | |||| | || | | || | | Sbjct 63251 AGCTGATCTCCCGTGACGAGGGTCTTCACACTGACTTCGCTTGCCTACTCCACTCCCACC 63310 Query 243467 TCCAGAACAAGCTACCATTCGAAACGGTCAAACAAA---TCATCACAGAAGCAGTTGAAA 243523 | ||||| | || | | ||||| | | ||||||| || || || | Sbjct 63311 TA---AACAATCGCGCAAGCAAGGAGGTCATTGAGAGCATCATCACTGACGCCGTCACCA 63367 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAAC 243583 || ||||| ||| | ||| ||| |||| ||| | | ||||||||| | | | Sbjct 63368 TTGAGAAGGAGTTCTTGACCGAGGCTCTTCCTTGCGCCATGCTGGGCATGAACGCCAACC 63427 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 | ||| ||||| ||||| || || |||||||| || | | || || ||| | || | Sbjct 63428 TTATGAAGCAGTATATCGAGTTTGTTGCCGACCGTCTTCTGGTTGCTCTCGGTAACGACA 63487 Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 | |||||||| || | |||||||| | ||| |||||| |||||| ||| || || | Sbjct 63488 AGGTGTACAAGTCGACTAACCCCTTCGACTTCATGGAGAACATTTCCCTTGGCGGCAAGA 63547 Query 243704 CTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATG 243753 | ||||||||||| ||||| ||| |||| || || | | || ||||| ||| Sbjct 63548 CCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAGAAGGCC-GGTGTCATG 63597 >seq53 Length=845014 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || | ||| |||| || || ||||||||||| || || || | || Sbjct 794799 GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATCAGAGTAGACTTTCCGGAACC 794740 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || || ||||||||||| | |||||||| ||| || | || | |||||| Sbjct 794739 GTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGACGGAGGTGGGTCTGGTTCAG 794680 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 || || || |||| || || || || || || | |||||||||||||| Sbjct 794679 CAGGATCTTGGCACCGTAGGCAAGGGAGAAGGTGCAGTTGCACAGATCCTCACC 794626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873287941250