Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq72 165 8e-36 >seq72 Length=1307737 Score = 165 bits (182), Expect = 8e-36 Identities = 486/741 (66%), Gaps = 16/741 (2%) Strand=Plus/Plus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 || || || ||||| || || ||||| | | ||| | || || || ||||| || || Sbjct 1152346 CCCACTCTCTTCAATGCCGGTACCCCCCAGGCTCAGCTCTCATCATGCTTCCT--TGTCG 1152403 Query 93958 AAC--AAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCT 94015 | |||| ||| ||| ||| || | ||| | |||||| |||||| | |||| Sbjct 1152404 ATATGAAGGATGACAGCATTGACGGTATCTACGATACTCTCAAGACCTGTGCCATGATCT 1152463 Query 94016 CAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACA 94075 |||| || || || ||||| ||| || ||| | | ||||| | || || |||| Sbjct 1152464 CAAAGATGGCAGGAGGTATCGGTCTCAACGTTCACCGCATTCGTGCTACAGGCTCGTACA 1152523 Query 94076 TCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACG 94135 | ||| ||||| ||||| ||||| || || |||| ||||| || || ||||||||| Sbjct 1152524 TTGCCGGAACCAACGGCACATCCAATGGAATCATCCCCATGCTGCGAGTGTTCAACAACA 1152583 Query 94136 CGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCG 94195 | || | || || || |||||||| | | | ||| | || || ||||||||| Sbjct 1152584 CTGCCAGATATGTTGATCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCTATCTATCTCG 1152643 Query 94196 AGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255 ||||||||||| | || || | ||| | || || |||||||| ||||| || || Sbjct 1152644 AGCCCTGGCACTCTGATGTCTTCGAGTTCCTGGATCTTCGAAAGAATCACGGAAAGGA-- 1152701 Query 94256 TGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 |||| | || ||||||| ||| ||||| ||| | || || || || ||||| | Sbjct 1152702 -AGAGATCCGTGCACGAGACCTGTTCCTAGCTCTATGGATCCCTGATCTCTTCATGAAGC 1152760 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 |||| ||||| ||| ||||| ||| | || || || || || || || ||| | | Sbjct 1152761 GCGTTGAGAAGAACGAGAACTGGACTCTCATGTGCCCTAACGAGTGCCCTGGCCTGGCTG 1152820 Query 94373 ACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGCC 94431 || | || | ||||| | | | || | || || | |||| | || | Sbjct 1152821 ACTGCTACGGCGAGGAGTTTGAGGCCCTTTACGAGAAGTATGAGAAGGAGGGTCGTGGTC 1152880 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | || || ||| |||||||||| | ||| | || | || ||||| Sbjct 1152881 -GTCAGACGATCCGTGCCCAGAAGCTGTGGTACTCGATTCTCGAAGCCCAAACCGAGACT 1152939 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 |||| |||| ||| | | |||||| || |||| ||| ||||||| || |||| Sbjct 1152940 GGTAACCCCTTCATGCTTTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACCTG 1152999 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACT--TCTCCGGACG 94609 || ||| ||||| ||||| ||||| |||||| | || ||||| |||| || | Sbjct 1153000 GGTACTATCCGCAGCTCCAATCTTTGCACTGAGATTATTGA--ATACTGCGCTCCCGATG 1153057 Query 94610 AGATTGCTGTGTGTAACCTGG 94630 || ||||||| || ||||||| Sbjct 1153058 AGGTTGCTGTTTGCAACCTGG 1153078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720262581000