Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq272 118 1e-21 seq322 102 8e-17 seq273 89.7 5e-13 seq72 89.7 5e-13 >seq272 Length=795643 Score = 118 bits (130), Expect = 1e-21 Identities = 336/507 (66%), Gaps = 17/507 (3%) Strand=Plus/Plus Query 52338 CGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAG 52397 ||||| ||||| |||||||||| ||||| || | | | |||| | || || Sbjct 63082 CGCAAGAAGGCCGAGTGGGCAATTCGCTGGATTCAGGACAAGAAATCCACATTCGCTCAG 63141 Query 52398 CGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT-GCCGCCAT 52456 || | || |||||||| || |||||| | || || ||| ||||| || |||| Sbjct 63142 CGTCTTGTTGCCTTCGCTGCCGTTGAGGGCATCTTCTTCAGCGGT-GCTTTCGCTTCCAT 63200 Query 52457 CTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATC 52516 ||| | | || | | || | ||||| || || || ||| ||||||| |||| || Sbjct 63201 CTTCTGGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTC 63260 Query 52517 GCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGA 52576 || ||||| || || ||||| ||||| || ||||| ||| || | | | ||| | Sbjct 63261 CCGTGACGAGGGTCTTCACACTGACTTCGCTTGCCT--ACTCCA---CTCCC---ACCTA 63312 Query 52577 AAAATTGGATTCGGACACGA--TCCT---GAGCATGTTCAAGGAGGCGGTGGCTATCGAA 52631 || | | | | | || || | |||||| ||| || || || | || || Sbjct 63313 AACAATCGCGCAAGCAAGGAGGTCATTGAGAGCATCATCACTGACGCCGTCACCATTGAG 63372 Query 52632 AAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATG 52691 |||||||| || || | || || || || |||||||||||||||| | ||| Sbjct 63373 AAGGAGTTCTTGACCGAGGCTCTTCCTTGCGCCATGCTGGGCATGAACGCCAACCTTATG 63432 Query 52692 TGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA-GCCAAAGTA 52750 |||| ||||||||||| || || ||||| |||| ||||| | | ||| || Sbjct 63433 AAGCAGTATATCGAGTTTGTTGCCGACCGTCTTCTGGTTGCTCTCGGTAACGACAAGGTG 63492 Query 52751 CTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAA 52810 | ||| | || || || || || ||| | |||||||| |||| ||||||||||| Sbjct 63493 -TACAAGTCGACTAACCCCTTCGACTTCATGGAGAACATTTCCCTTGGCGGCAAGACCAA 63551 Query 52811 CTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| ||||||||||| ||||| || || Sbjct 63552 CTTCTTCGAGAAGCGCGTCGGTGACTA 63578 >seq322 Length=957674 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 93523 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 93582 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||||||||| || || || || || ||||| ||| || || | Sbjct 93583 AAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 93642 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||||| || | || || || || || || || Sbjct 93643 TTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTG 93702 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 93703 ACGAAAATCTGCAT 93716 >seq273 Length=2741725 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || |||||||||||| Sbjct 1841075 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1841134 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || || | | |||| || ||||||||||| ||||| Sbjct 1841135 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGG 1841194 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | |||| ||| || | |||||| | || || | Sbjct 1841195 ATACCCTCCTTGTC-CTGAATCTTCGACTTAACGTTG-TCGATGGTGTCAGAAGATTCGA 1841252 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 |||||| || | || || || || || || || || Sbjct 1841253 CCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTGAC 1841289 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||| || || ||||| | Sbjct 1841394 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCG 1841453 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 | || || ||||||||||| ||||| || || || ||||| ||| | || | || Sbjct 1841454 AAAATCAGGCGCTGTTGGTCAGGAGGGATTCCCTCCTTGTC-CTGAATCTTCGACTTGAC 1841512 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| || | ||||| ||||||| || | || || || || || || | Sbjct 1841513 ATTG-TCGATGGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCT 1841571 Query 138599 TTACAAAAATCTGCATG 138615 | || |||||||||||| Sbjct 1841572 TGACGAAAATCTGCATG 1841588 >seq72 Length=1307737 Score = 89.7 bits (98), Expect = 5e-13 Identities = 183/272 (67%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 153684 CCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 153743 |||| || | ||| ||||| || || ||||| || || ||| | |||||| | || Sbjct 1153001 CCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAAAGCATGAAGGGGTTA 1152942 Query 153744 CCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGC 153803 || |||||| ||| | ||||| || | ||| | ||| || || | | ||| Sbjct 1152941 CCAGTCTCGGTTTGGGCTTCGAGAATCGAGTACCACAGCTTCTGGGCACGGATCGTCTGA 1152882 Query 153804 CGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAG 153863 ||| || ||||| |||| || |||||| || ||||||||| |||||||||||| Sbjct 1152881 CGACCACGACCCTCCTTCTCATACTTCTCGTAAAGGGCCTCAAACTCCTCGCCGTAGCAG 1152822 Query 153864 TCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACG 153923 || || ||||| || |||| | || ||||| || | ||| | |||| | ||| Sbjct 1152821 TCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACG 1152762 Query 153924 CGTCGCATGAACAGATCCGGCACCCAGAGCGC 153955 || |||||| ||||| || | ||| || || Sbjct 1152761 CGCTTCATGAAGAGATCAGGGATCCATAGAGC 1152730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259453442000