Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq272 123 2e-23 seq273 114 1e-20 seq322 107 2e-18 >seq272 Length=795643 Score = 123 bits (136), Expect = 2e-23 Identities = 344/518 (66%), Gaps = 21/518 (4%) Strand=Plus/Plus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 ||||| | |||| |||||||||||||| || | ||| | || | || ||| Sbjct 63073 CCCTGTATCCGCAAGAAGGCCGAGTGGGCAATTCGCTGGATTCAGGACAAGAAATCCACA 63132 Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189 | || | ||| | | || ||||| ||| |||||| |||||||| || ||||| Sbjct 63133 TTCGCTCAGCGTCTTGTTGCCTTCGCTGCCGTTGAGGGCATCTTCTTCAGCGGT-GCTTT 63191 Query 47190 -GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGA 47248 || | || || | |||| | || | ||||| || ||||| || |||||| Sbjct 63192 CGCTTCCATCTTCTGGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGA 63251 Query 47249 GCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT---CTACTACAACAC 47305 ||| ||||| | ||||| || || ||||| |||| || || || | ||| | || | Sbjct 63252 GCTGATCTCCCGTGACGAGGGTCTTCACACTGACTTCGCTTGCCTACTCCACTCCCAC-C 63310 Query 47306 TAGAG--TCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCG 47361 || | ||| ||| ||| || | | | || | ||| | | || |||| Sbjct 63311 TAAACAATCGCGCAAGCAAGGAGGTCAT--------TGAGAG-CATCATCACTGACGCCG 63361 Query 47362 TCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACG 47421 || ||||||||| |||||| || |||||||||| || | | |||| ||||||| Sbjct 63362 TCACCATTGAGAAGGAGTTCTTGACCGAGGCTCTTCCTTGCGCCATGCTGGGCATGAACG 63421 Query 47422 CGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGT 47481 | | | |||| |||| ||||| ||||| |||||||| || || ||| || || Sbjct 63422 CCAACCTTATGAAGCAGTATATCGAGTTTGTTGCCGACCGTCTTCTGGTTGCTCTCG-GT 63480 Query 47482 ATCC-CAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAG 47540 | | |||| | ||| | | || || ||||| || ||| | |||||||| || | Sbjct 63481 AACGACAAGGTGTACAAGTCGACTAACCCCTTCGACTTCATGGAGAACATTTCCCTTGGC 63540 Query 47541 GGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||||||||||||| ||||||||||||||||| || || Sbjct 63541 GGCAAGACCAACTTCTTCGAGAAGCGCGTCGGTGACTA 63578 >seq273 Length=2741725 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| ||| || ||||| || ||| Sbjct 1841391 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTACCA 1841450 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| ||||| || || ||||| || |||||||||||| || ||| |||| Sbjct 1841451 GCGAAAATCAGGCGCTGTTGGTCAGGAGGGATTCCCTCCTTGTCCTGAATCTTCGACTTG 1841510 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | | |||||| |||| ||| | || |||||||| || || Sbjct 1841511 ACATTGTCGATGGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 1841570 Query 127097 TTTACAAAAATCTGCATG 127114 || || |||||||||||| Sbjct 1841571 TTGACGAAAATCTGCATG 1841588 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| || || || ||||| ||| Sbjct 1841075 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1841134 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||||| ||||| || |||||||| Sbjct 1841135 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGG 1841194 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || ||| ||| | |||| |||| |||||| | | ||||| Sbjct 1841195 ATACCCTCCTTGTCCTGAATCTTCGACTTAACGTTG-TCGATGGTGTCAGAAGATTCGAC 1841253 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| ||| | || |||||||| || || || || Sbjct 1841254 CTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTGAC 1841289 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| ||||||||| |||| | |||||||| || ||||| || |||||||| Sbjct 1840919 TCTTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTA 1840978 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| ||| ||| | | || | ||||||| |||||||| | || | Sbjct 1840979 TCCTGGATCTTCGACTTCACATTGTCAATCGTGTCCGATGATTCGACTTCCAGTGTGATA 1841038 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || || || || ||||||||||| Sbjct 1841039 GTCTTTCCCGTGAGTGTCTTGACGAAAATCTGCAT 1841073 >seq322 Length=957674 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| || || ||||| || || Sbjct 93520 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 93579 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| ||||| || ||||| || ||||||||||||||| ||| || |||| Sbjct 93580 GCGAAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 93639 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | | ||| || |||| ||| | || || || || || || Sbjct 93640 ACGTTG-TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTGAGGGT 93698 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 93699 CTTGACGAAAATCTGCAT 93716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497976714000