Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq322 147 2e-30 seq200 116 4e-21 seq273 107 2e-18 >seq322 Length=957674 Score = 147 bits (162), Expect = 2e-30 Identities = 153/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| Sbjct 93525 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 93584 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||| ||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 93585 GATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 93643 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || ||||| || | ||||| || || ||||| || || || | Sbjct 93644 TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGA 93703 Query 46581 CAAAGATTTGCATTTTGC 46598 | || || ||||| |||| Sbjct 93704 CGAAAATCTGCATCTTGC 93721 >seq200 Length=1806557 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| | || |||||||||||||||||||| | Sbjct 889114 CCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 889173 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||| ||||| | || | | |||||||||| ||||| ||||| | Sbjct 889174 TCAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 889233 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 889234 CAATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 889293 Query 46584 AG 46585 || Sbjct 889294 AG 889295 >seq273 Length=2741725 Score = 107 bits (118), Expect = 2e-18 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || |||||||||||||| || || Sbjct 1841110 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 1841169 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||| ||||||| || | | |||||||||| |||||| ||| | ||| Sbjct 1841170 GATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGACTT-AACGT 1841228 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| ||||| || || | ||||| || ||||| || || || || | Sbjct 1841229 TGTCGATGGTGTCAGAAGATTCGACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTGA 1841288 Query 46581 C 46581 | Sbjct 1841289 C 1841289 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || |||| || |||||||| || ||||| Sbjct 1840882 CTCCTTCTGGATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCAAGCTGCTTTCCAGCGAA 1840941 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||| ||| ||||||| ||| | | Sbjct 1840942 GATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTATCCTGGATCTTCGACTTCACATT 1841001 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||||| || |||| ||||| || || ||||| || || || || Sbjct 1841002 GTCAATCGTGTCCGATGATTCGACTTCCAGTGTGATAGTCTTTCCCGTGAGTGTCTTGAC 1841061 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 1841062 GAAAATCTGCAT 1841073 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || || |||||||| || ||||| Sbjct 1841396 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 1841455 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||| ||||| | || | | |||||||||| |||||| ||||| | Sbjct 1841456 AATCAGGCGCTGTTGGTCAGGAGGGATTCCCTCCTTGTCCTGAATCTTCGACTTGACATT 1841515 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || || || || || | |||||||| ||||| || || || || || Sbjct 1841516 GTCGATGGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 1841575 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 1841576 GAAAATCTGCAT 1841587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235043897000