Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq272 143 3e-29 seq322 138 1e-27 seq273 125 7e-24 seq200 123 2e-23 >seq272 Length=795643 Score = 143 bits (158), Expect = 3e-29 Identities = 200/277 (72%), Gaps = 5/277 (2%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||||||||||| || || | |||||||| | ||||||||| ||| || || Sbjct 62969 GTATGTGTCGATGAGGAGGGAGTAGGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAA 62910 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285 ||||| |||||||| ||||| | ||| || || | || ||| ||||| ||||| | Sbjct 62909 TCCGTAGAAGCACCGAGCCTCAGGAATCTGGACCTC-AGCGCTGAAGCGCTCAACCAGGT 62851 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 | || ||||| ||||| || ||| ||||| ||||| || ||||| || ||| | || Sbjct 62850 TCTCATTGACAATGCCATCAGAGGCAGCGAAGAAGGCAAGAACGTGAGAGACGAAGTAGC 62791 Query 133346 GCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 |||||| ||||||| ||| | ||||||| | ||||||||||| || | |||| Sbjct 62790 GCTCGTCATCGTTCATGCGGGTGTGCCAGTCGTGGAGATCCTTGGACAGATCGATTTCCT 62731 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || || ||| || |||||||| Sbjct 62730 CAGCAGTCCAGAAAGAAGCTTCGTGCTTCTTGTACAT 62694 >seq322 Length=957674 Score = 138 bits (152), Expect = 1e-27 Identities = 149/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| |||| || ||| | Sbjct 93719 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACTATCACCCTCGAGGTGGAGTCT 93660 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| || ||| |||| Sbjct 93659 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 93601 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| || || | ||| ||||| ||||| || |||| ||||||||| |||||| Sbjct 93600 CCAACAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTA 93541 Query 38420 CAACATCCAAAAGGA 38434 ||||||||| ||||| Sbjct 93540 CAACATCCAGAAGGA 93526 >seq273 Length=2741725 Score = 125 bits (138), Expect = 7e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| || |||||| |||| ||||| | | |||| | | Sbjct 1841291 TCGTCAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAATCTTCTGACACCATCG 1841232 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| |||| || || | ||||| ||||| || || ||||||||||||| || Sbjct 1841231 ACAACG-TTAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAACAGCGCCTG 1841173 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || || | ||||||||| ||||||||||||||| ||| Sbjct 1841172 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 1841113 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || | || || || |||||||| ||| || | || || Sbjct 1841112 GAGTCCACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 1841075 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | | Sbjct 1841587 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 1841528 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || || | ||||| |||||||| || | |||||| Sbjct 1841527 GATACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATCCCTCCTGACCAA 1841468 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| || || ||||| || || | ||||||||| |||||||||| Sbjct 1841467 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 1841408 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||| || || Sbjct 1841407 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 1841373 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || ||||| | || ||||| | | Sbjct 1841073 ATGCAGATTTTCGTCAAGACACTCACGGGAAAGACTATCACACTGGAAGTCGAATCATCG 1841014 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | || || |||| || || ||||| ||||| | ||||| Sbjct 1841013 GACACGATTGACAATG-TGAAGTCGAAGATCCAGGATAAGGAGGGTATTCCTCCTGACCA 1840955 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || |||| || ||||| |||||||| Sbjct 1840954 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAAGACGGCCGTACCCTTTCTGACTACAA 1840895 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| | || || || |||| || ||| | | ||||||| Sbjct 1840894 CATCCAGAAGGAGTCCACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGCC 1840845 >seq200 Length=1806557 Score = 123 bits (136), Expect = 2e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || |||||| | | Sbjct 889294 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATT 889235 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || || | ||||| |||||||||||| | ||||||||||| || Sbjct 889234 GACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAACAGCGCCTG 889175 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | ||||||||| |||||||||||||| ||| Sbjct 889174 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCAGACTACAACATCCAGAAG 889115 Query 38433 G 38433 | Sbjct 889114 G 889114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169830224000