Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq200 331 1e-85 seq71 84.2 3e-11 >seq200 Length=1806557 Score = 331 bits (366), Expect = 1e-85 Identities = 1031/1590 (65%), Gaps = 31/1590 (2%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || ||||| | ||| || || || || || || Sbjct 317192 TCATCCTCCTCCTTGTACTTCTCGGCATCGGAAAGCATGCGCTCGATCTCCTCCTTGGAC 317133 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || ||||| | ||| || || | | |||| || | Sbjct 317132 AGGCGTCCCTTGTCGTTGGTGATGACGATCTTGTTGGACTTGCCAGTGCCCTTCTCGACG 317073 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || |||| ||||| || ||||||| |||||| | || | || || || | Sbjct 317072 GCAGAGACGTTCATGATACCGTTGGCATCAAGATCGAAGGTAACCTCGATCTGGGGAACA 317013 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| || || || || | || || | || | | |||| ||| | Sbjct 317012 CCGCGAGGAGCGGGAGGGATGCCAGTGAGCTCGAACTTGCCCATCAGGTTGTTGTCCTTA 316953 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | ||| ||||| || ||||| | || || | || || || || Sbjct 316952 GTGCGTTGACGCTCACCCTCGTAGACCTGGATAAGAACACCGGGCTGGTTGTCGGAGAAG 316893 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | ||||| || || || | ||||| | | |||| Sbjct 316892 GTGGAGAAGACCTCGGACTTCTTGGTGGGAATGGTGGTGTTGCGGGGAATCAGCTTGGTC 316833 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTC---CAAGAGTAAC 6985 || |||||||| ||| || | || ||||| || |||| ||||| || ||| | | Sbjct 316832 ATCATACCACCAGCAGTCTCAATACCGAGAGAGAGGGGTGCGACGTCGAGCAGGAGGATC 316773 Query 6986 AGGT-------CTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGT 7038 || |||| | | | || ||||| | | ||| || || ||||| | Sbjct 316772 TCGTTGGTGGACTTGGA---AGTAGTG----TCACCAGACAGGATAGCAGCCTGGACGGC 316720 Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098 || ||||| || || |||||||||||||| || | || || | || || ||||| || Sbjct 316719 AGCGCCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTTCCGTTGAA 316660 Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158 || || | | | | || || ||||| || || || |||||||| | |||||| Sbjct 316659 GTAGTCGGTGATGAGCTTCTGGATACGGGGGATACGGGTGGAACCACCGACGAGAACGAT 316600 Query 7159 TTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218 || | || | || |||||||| | ||| || ||||| || | || Sbjct 316599 CTCGTGGACCTGGCTCTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACGGGCTGGAT 316540 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 ||||| | |||| || || || || ||||| ||||| || ||||| || || Sbjct 316539 GGTGGAGCGGAAGAGGTCCTGGCAGAGCTCTTCGAAACGAGCACGAGTGATGGAGGTGTA 316480 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338 ||| || | || ||| | | || || || ||||||| || || || | || || | Sbjct 316479 GAAGTCGATACCCTCGAACAGAGAGTCGATCTCAATGGAGGTCTGGGCGGAAGAGGAGAG 316420 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || ||||| || ||||| || || || || | ||| || || ||||| | ||| | Sbjct 316419 GGTACGCTTGGCACGCTCGCAAGCAGTACGAAGACGGCGCAGAGCACGAGAGTTGGTAGC 316360 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGA 7455 | ||| ||||| | || || || || || | | |||||| | || ||| | | Sbjct 316359 CAGATCCTTCTTGTTCTTGCGCTTGAATTCGTTAACGAAGTGGTTGACCAGGCGGTTG-- 316302 Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 || || ||||| || || | ||||| || || || || | ||||| || |||||||| Sbjct 316301 -TCAAAGTCTTCTCCTCCAAGATGTGTGTCACCAGCAGTGGACTTGACCTCGAAGATACC 316243 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || ||| | | | || ||||| || ||||||||||| || || || ||||| || Sbjct 316242 CTCCTCGATGGTGAGGAGAGAGACATCGAAGGTACCACCACCGAGATCGAAGATGAGGAC 316183 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| ||| | || | ||||| ||||||||||| || || || || || || || || Sbjct 316182 GTTGCGCTCGCCCTCAATCTTCTTGTCGAGACCGTAGGCAATGGCAGCGGCGGTAGGCTC 316123 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || ||||| || ||| || || ||||| | || || || || || || || Sbjct 316122 GTTGATGATACGGAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTGGTAGCCTGACG 316063 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || ||||| |||||||| ||||| || ||||| |||| |||| | |||||| Sbjct 316062 CTGGGAGTCGTTGAAGTAGGCGGGGACGGTCACGACAGCGTTGTTGACGGTGCCACCGAG 316003 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || | || ||| | || ||| ||||| || | |||||| || ||||| || | | Sbjct 316002 GTAGGCCTCGGCGGTCTCACGCATCTTGGTGAGGATCATCGAGGAGATCTCCTCGGGAGT 315943 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATC-CGCAGCACCGG 7874 ||||| || || || || || || || || || | | ||| ||| | | | | | Sbjct 315942 GAACTGCTTGGTCTCTCCCTTGAACTCGACCTCGACGACGGGCTTACCACCCTTCTC--- 315886 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934 ||| | ||| | | | | ||||| ||| | ||||||| || | ||||| | Sbjct 315885 -GATGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGCATCTGTGAACTTGC 315827 Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994 ||||| |||||||| || || || |||||||| | |||||||||||| |||||||| Sbjct 315826 GGCCGATCAGACGCTTGGCGTCGAAGACTGTGTTGTGGGGGTTCATGGCGACTTGGTTCT 315767 Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054 | || || || ||||||||||| || | || || || || ||| | || ||||| | Sbjct 315766 TGGCGGCATCACCGATAAGACGCTC---GGTGTCTGTGAAGGCCACGAAAGAAGGGGTGG 315710 Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 |||| || || ||||| || ||||| || || | ||| | | ||| ||| |||| Sbjct 315709 TTCGGTTACCCTGGTCATTGGCAATGATATCGCATCTGTCCTCGCGGAAGATGCCCACGC 315650 Query 8115 ACGAATACGTTGTTCCTAAATCAATACCGA 8144 | || ||||| || || | || ||||||| Sbjct 315649 AAGAGTACGTGGTACCAAGGTCGATACCGA 315620 >seq71 Length=1030578 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| || ||||| || || | ||| || || || || || |||| | ||| ||| ||| Sbjct 1029482 CTTCTCAAGACCATAGGCCAGAGCGGCGGCGGTAGGCTCGTTAACGACACGGAGAACGTT 1029541 Query 7657 CAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCT-TGTCGTTGCGAATCGTTAAAGTA 7713 |||||||||||| ||| | ||||| || || ||| || || || || ||||| ||||| Sbjct 1029542 CAGGCCAGCAAT--TTGACCAGCATCCTTGGT-GCTCTGGCGCTGAGAGTCGTTGAAGTA 1029598 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 ||| ||||| || || || |||| | |||| ||| ||| || | || || | || Sbjct 1029599 GGCAGGGACAGTGACAACAGCGTTCTTGACAGGCTTGGAGAGGTAGGCCTCAGCAGTCTC 1029658 Query 7774 TTTCATTTTGGTAAGAAC 7791 ||||| ||| | || || Sbjct 1029659 CTTCATCTTGTTGAGGAC 1029676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129028899000