Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq72 206 3e-48 seq132 114 2e-20 seq272 98.7 1e-15 >seq72 Length=1307737 Score = 206 bits (228), Expect = 3e-48 Identities = 899/1404 (64%), Gaps = 51/1404 (4%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||||||| ||||| ||||||| || || | |||||| || || | ||||| ||| Sbjct 1152237 CCCACAGCACATGATCATGCGTGTTGCTGTGGGTATCTGGGGTGATAACATTGAACGTGT 1152296 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || | |||||| | || | || || | || || ||||| Sbjct 1152297 CATCGAGACCTACAACTACATGTCCAACAAGTTCTTTACTCATGCTTCTCCCACTCTCTT 1152356 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| || ||||| || | || | || || |||||| | | | ||||| || Sbjct 1152357 CAATGCCGGTACCCCCCAGGCTCAGCTCTCATCATGCTTCCTTGTCGATATGAAGGATGA 1152416 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || | || || |||| ||||||| |||||| ||||||||| ||| || Sbjct 1152417 CAGCATTGACGGTATCTACGATACTCTCAAGACCTGTGCCATGATCTCAAAGATGGCAGG 1152476 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACA 111908 |||||||| | || | || | | || | || |||||| || || || Sbjct 1152477 AGGTATCGGTCTCAACGTTCACCGCATTCGTGCTAC--AGGCTCGTACATTGCCGGAACC 1152534 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || ||| |||| || || || ||||| || || || ||| ||| || | ||| Sbjct 1152535 AACGGCACATCCAATGGAATCATCCCCATGCTGCGAGTGTTCAACAACACTGCCAGATAT 1152594 Query 111969 GTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || | || | ||| ||| || | | || ||||||| ||||| |||||| Sbjct 1152595 GTTGATCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCTATCTATCTCGAGCCCTGGCAC 1152654 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 | ||| || | |||||||| || | || || || || | || ||| || ||| Sbjct 1152655 TCTGATGTCTTCGAGTTCCTGGATCTTCGAAAGAATCACGGAAAGGAAGAGATCCG-TGC 1152713 Query 112086 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 || || || ||| ||||| ||||| || ||||||||||||||| | |||||| ||| Sbjct 1152714 ACGAGACCTGTTCCTAGCTCTATGGATCCCTGATCTCTTCATGAAGCGCGTTGAGAAGAA 1152773 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 | || ||| ||||| | || || || || || || || | || | || || Sbjct 1152774 CGAGAACTGGACTCTCATGTGCCCTAACGAGTGCCCTGGCCTGGCTGACTGCTACGGCGA 1152833 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGG--CGACTG-CGA-CGG 112260 ||||||||| ||||| ||| ||||| ||| | || |||| | || | | ||| | | Sbjct 1152834 GGAGTTTGAGGCCCTTTACGAGAAGTATGAGAAGGAGGGTCGTGGTCGTCAGACGATCCG 1152893 Query 112261 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 |||| | || | ||||| | | |||||| | | |||||||||||||||| || Sbjct 1152894 TGCC-----CAGAAGCTGTGGTACTCGATTCTCGAAGCCCAAACCGAGACTGGTAACCCC 1152948 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 | ||||||||||| || || || |||| ||||| || || ||||| ||||| ||| Sbjct 1152949 TTCATGCTTTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACCTGGGTACTATC 1153008 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 || ||||| || || || || || | |||| | |||||| ||||| Sbjct 1153009 CGCAGCTCCAATCTTTGCACTGAGATTATTGAATACTGCGCTCCCGATGAGGTTGCTGTT 1153068 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--ATTTG 112497 || ||||| || || | ||||| ||| || || ||| ||| | | | | Sbjct 1153069 TGCAACCTGGCTTCGCTGGCTCTGCCCGCCTACGTTGAT--TACGACGAGGGCTGCTACA 1153126 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | | || |||||||||||||| | || ||||| ||| | | || | Sbjct 1153127 ACTTTAAGAAGCTCCACGAAGTTACACGGGTTATCGTGCGTAACCTGAACCGTATCATCG 1153186 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 || || | ||||||||| || || || || || ||| | || || || |||| Sbjct 1153187 ATGTCAACTACTACCCCGTTCAGGAGGCACGCAACAGCAACATGCGTCATCGACCCATTG 1153246 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA-----TTTGA 112672 |||| ||||| || ||||| || |||| |||| ||| | | ||||| || || Sbjct 1153247 GTCTTGGTGTTCAGGGTCTTGCAGATGCATTC-----TTGGCTCTACGCATGCCTTTCGA 1153301 Query 112673 TTCCGACGAAGC---GAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGC 112729 || || || || || ||| || || || ||||| || || || ||||| Sbjct 1153302 GTCGCCTGAGGCTCGTCAGCTAAACAA---GCAGATCTTCGAGACTATCTACCATGCCGC 1153358 Query 112730 TCTTGAGGCGAGTTC--GGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 112787 ||| |||| | ||| | || ||| | ||||| || | ||||| |||| Sbjct 1153359 CCTT--ACTGAGTCCATGGAACTCGCGAAGGAGCAAGGTCCCTACCAGACCTTCAAGGGA 1153416 Query 112788 TCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC----AAGCT 112843 || ||||||||| | || | ||||| || || |||| |||| || | || | || Sbjct 1153417 TCCCCAGCTTCAGAGGGAATCCTTCAGTTCGACATGT-GGAATGTCACCCCCTCTGACCT 1153475 Query 112844 TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 112903 | | || ||||| | || || | ||||||||| | ||| | || |||||||| Sbjct 1153476 T---TGGGAGTGGGAGACCCTTCGAGAGCAGATCAAGGAGCACGGTATCCGCAACAGTCT 1153532 Query 112904 TTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 112963 | |||| || ||||| || ||| ||| | || ||||| || || ||||||||||| Sbjct 1153533 GCTCGTGGCCCCTATGCCTACCGCCAGTACCTCTCAGATCTTAGGCAACAATGAATGCTT 1153592 Query 112964 TGAACCCTACACGACGAACATCTA 112987 || |||||||| | |||||||| Sbjct 1153593 CGAGCCCTACACATCAAACATCTA 1153616 >seq132 Length=1352002 Score = 114 bits (126), Expect = 2e-20 Identities = 297/447 (66%), Gaps = 18/447 (4%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| |||||||| || | ||||| | || | || ||| | || || || |||| Sbjct 702896 TCAAAACGACCTGGACGCATCAGCGCCTTGTCCAAGACGTCAGCACGGTTGGTACCGGCT 702837 Query 15948 ATGACAACAATACCTGTTTCGT--TATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 | || |||| |||| | | ||| ||||||||||| ||||| | || |||||| | Sbjct 702836 AGAACCACAA--CCTGCTCCCGAGTATTGAAACCATCCATTTCTGTGAGAATCTGGTTGA 702779 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTT------TC 16059 || ||| ||||||||||| || | ||||| | |||| || | || Sbjct 702778 GTGTAGCTTCTCGTTCATCATTGCCTCCGAAACCACGACCACTCTCCTGTCTCGCGCGTC 702719 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 16119 | | |||||| || || |||||||||| ||||| || || | | | | | | Sbjct 702718 CAATGGCATCGATTTCGTCAATGAAGATAATGCAAGGAGCGTTCTTCCTTCCCTCCGCGA 702659 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGC 16177 |||| || |||||||| | || |||||||||||||| || ||||| | | | || Sbjct 702658 AGAGGTCTCGTACACGAGATGGACCGACACCAACAAACATTTCTACAAATTCGGAACCGC 702599 Query 16178 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 || | || |||||| || || || || ||| | || ||| ||||||||||| Sbjct 702598 TGACGCT--GAAGAAGGGCACGCCTGACTCTCCTGCAGTAGCCTTGGCAAGAAGAGTCTT 702541 Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTCCA 16295 ||| || || || || || |||| |||||| || ||||||||||| || |||| Sbjct 702540 ACCGGTTCCAGGAGGCCCAGCCAGGATGGCACCACGAGGAATCTTGGCACCTAGCTTC-- 702483 Query 16296 AAGTATCTCTCAGGTTGCTTAAGAAAA 16322 | || |||| || ||||| || ||| Sbjct 702482 TCGAATTTCTCTGGCTGCTTGAGGAAA 702456 >seq272 Length=795643 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 |||||||| ||||||||| ||| | ||| | || | ||| | |||||||| ||| Sbjct 63163 GTTGAGGGCATCTTCTTCAGCGGTGCTTTCGCTTCCATCTTCTGGTTGAAGAAGCGTGGT 63222 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || ||||| |||||| ||||||||||||||| ||||| ||||||||||| || ||| Sbjct 63223 CTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCCCGTGACGAGGGTCTTCAC 63279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738714342000