Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq72 205 1e-47 seq272 87.8 2e-12 >seq72 Length=1307737 Score = 205 bits (226), Expect = 1e-47 Identities = 1127/1778 (63%), Gaps = 61/1778 (3%) Strand=Plus/Minus Query 105558 TGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTC 105617 |||||||||| ||| ||| |||| || || ||||||||||| || ||||| || | Sbjct 1153993 TGAACTGAATAGGGGCCGCAGCAGCCTGAGTACGAAGATAGTACATGCCAGTCTTAAGCC 1153934 Query 105618 CTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATG 105676 | ||||||| || || | |||||| | | |||| ||| | ||| | ||| Sbjct 1153933 CCAGTTTCCA-GCCAGCAAAGTGCATACTGGTAATCTTGCCCATTGAGGGATCCTTCATA 1153875 Query 105677 AAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATG 105736 | || | | |||| ||||||||||| ||| || | || ||||| | | Sbjct 1153874 TGGATGTTGAGAGATTGAGATTGGTCAATGAAAGCACCTCGATCGGCGGCCATCTGCACA 1153815 Query 105737 ACATCCTTCATCTTGA----TTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGG 105792 || || | |||| | ||||| || || ||||||| ||||| ||||| || Sbjct 1153814 AC----TTGACGTTGAGAAATCTCCCAGACGGTCTTGTAGAGAGCCTTGAGGTCATCAGG 1153759 Query 105793 GATATCTGAGATATTTTGAATTGAACC---CCCCGCCTTGACCATGAGATCCTTCATATC 105849 ||| | | || ||||| || ||||| | | || ||| | | | |||||| | Sbjct 1153758 GATGTTGGGAATGTTTTGGATCGAACCTTGCTCAGCAATGA---TTCGGTTCTTCATGGC 1153702 Query 105850 CTTGGACCA-AAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAA 105908 | |||||| ||| |||| || ||||| || | ||| |||||| | | | Sbjct 1153701 ATCGGACCACAAGCCCAA-CTCAACAAGATCTTTCAAGAGCCAGGGGTTGACGACCTGGA 1153643 Query 105909 ACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCAT 105968 ||||||| || || | || |||||||| | |||||||| || |||||||||| Sbjct 1153642 ACTCTCCAGCCAGAACACGTCGGGAGTAGATGTTTGATGTGTAGGGCTCGAAGCATTCAT 1153583 Query 105969 TATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTAC 106028 | || || ||||| || | ||| ||| || ||||| || |||| | |||||||| | Sbjct 1153582 TGTTGCCTAAGATCTGAGAGGTACTGGCGGTAGGCATAGGGGCCACGAGCAGACTGTTGC 1153523 Query 106029 GAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGT 106086 | | ||| | |||||||| | || || ||||| || | | | || || Sbjct 1153522 GGATACCGTGCTCCTTGATCTGCTCTCGAAGGGTCTCCCACTCCCAAAGGTCAGAGGGGG 1153463 Query 106087 TTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGT 106146 | || |||| |||| || || ||||| | || | || | || || |||| || || Sbjct 1153462 TG-ACATTCC-ACATGTCGAACTGAAGGATTCCCTCTGAAGCTGGGGATCCCTTGAAGGT 1153405 Query 106147 CTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCC---AGGGATGCGTGATA 106203 || |||| |||||| | | || | ||| || | | ||| |||| || || || Sbjct 1153404 CTGGTAGGGACCTTGCTCCTTCGCGAGTTC-CA--TGGACTCAGTAAGGGCGGCATGGTA 1153348 Query 106204 CATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCG 106258 || || || ||||| | || | || || ||| || || || |||| Sbjct 1153347 GATAGTCTCGAAGATCTGCTTGTTTAGCTGACGAGCCTCAGGCGACTCGAAAGGCATGCG 1153288 Query 106259 TAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGT 106318 ||| | || || | |||| || ||||| |||||||| | |||||| |||| || Sbjct 1153287 TAGAGCCAAGAA-----TGCATCTGCAAGACCCTGAACACCAAGACCAATGGGTCGATGA 1153233 Query 106319 CGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTT 106378 ||||| || || || || || |||||| || | || || |||| ||||| Sbjct 1153232 CGCATGTTGCTGTTGCGTGCCTCCTGAACGGGGTAGTAGTTGACATCGATGATACGGTTC 1153173 Query 106379 AGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTC 106438 || || | || | ||| | ||| || || || | | | | | || Sbjct 1153172 AGGTTACGCACGATAACCCGTGTAACTTCGTGGAGCTTCTTAAAGTTGTAGCAGCCCTCG 1153113 Query 106439 TCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCC 106498 || | || || || || || || | || |||| ||||||||||| |||||| Sbjct 1153112 TCGTAATCAACGTAGGCGGGCAGAGCCAGCGAAGCCAGGTTGCAAACAGCAACCTCATCG 1153053 Query 106499 TTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTC 106558 | | ||| || | ||| || || || | ||||| || || || |||| ||| Sbjct 1153052 GGAGCGCAGTATTCAATAATCTCAGTGCAAAGATTGGAGCTGCGGATAGTACCCAGGTTC 1152993 Query 106559 TTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 106618 || ||||| ||||| |||||| ||||||||||| |||||| |||| | || ||||| Sbjct 1152992 TTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCG 1152933 Query 106619 GTCTGTGACTTGAGAATTGCCTTCCACA-CATCGG----CGGCTGGTACAATGGCGTTGG 106673 || || | | |||||| | | ||||| | || | ||| | || | | | Sbjct 1152932 GTTTGGGCTTCGAGAATCGAGTACCACAGCTTCTGGGCACGGATCGTCTGACGAC----- 1152878 Query 106674 CCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGG 106733 | || |||||| ||| ||||| ||| ||||| ||||||||||| || ||| | Sbjct 1152877 CACGACCCTCCTTCTCATACTTCTCGTAAAGGGCCTCAAACTCCTCGCCGTAGCAGTCAG 1152818 Query 106734 AGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCT 106793 || || || || || || || | |||| ||| | | || |||||| |||| Sbjct 1152817 CCAGGCCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCT 1152758 Query 106794 TCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCG 106852 ||||||| || || || ||||| || | | || || |||| | ||| || | ||||| Sbjct 1152757 TCATGAAGAGATCAGGGATCCATAGAGCTAGGAACAGGTCTCGTGCACGGATC-TCTTCC 1152699 Query 106853 TCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGA 106912 | || || || ||| | || |||||||| | || ||| | |||||| ||||| ||| Sbjct 1152698 TTTCCGTGATTCTTTCGAAGATCCAGGAACTCGAAGACATCAGAGTGCCAGGGCTCGAGA 1152639 Query 106913 TAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGC 106968 |||| || | | || | | | ||| | | |||| ||||| | || ||| Sbjct 1152638 TAGATAGCAAAGGCACCAGGGCGCTTGTTGCC-ACCCTGATCAACATATCTGGCAGTGTT 1152580 Query 106969 GTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--A 107026 ||| || || || ||||| || || || |||| ||| || || || || ||| | Sbjct 1152579 GTTGAACACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTTCCGGCAATGTA 1152520 Query 107027 CGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAG 107086 |||| | | || | | || | || | || ||||| || ||| ||||||| Sbjct 1152519 CGAGCCTG--TAGCACGAATGCGGTGAACGTTGAGACCGATACCTCCTGCCATCTTTGAG 1152462 Query 107087 ATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCG 107146 || ||||| | | ||||| | |||||||||| || ||| ||||| | || Sbjct 1152461 ATCATGGCACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCG 1152402 Query 107147 ATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTT 107206 | ||||||||| || | ||| | || ||||| ||||||||||| || || | Sbjct 1152401 ACAAGGAAGCATGATGAGAGCTGAGCCTGGGGGGTACCGGCATTGAAGAGAGTGGGAGAA 1152342 Query 107207 GCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTC 107265 || ||| | || | || | | |||||| | || ||| ||||| | |||| ||||||| Sbjct 1152341 GCATGAGTAAAGA-ACTTGTTGGACATGTAGTTGTAGGTCTCGATGACACGTTCAATGTT 1152283 Query 107266 TTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 || || ||| || | || |||||||| | ||||| Sbjct 1152282 ATCACCCCAGATACCCACAGCAACACGCATGATCATGT 1152245 >seq272 Length=795643 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| |||||||| || ||||| || || || || |||||| || || ||||| ||||| Sbjct 63279 GTGAAGACCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACC 63220 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||||||| | || | ||| | ||| ||||||||| ||||| || Sbjct 63219 ACGCTTCTTCAACCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAGATGCCCTCAACGGC 63160 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---AAACCATTTCAT 117461 || || |||| ||| |||| ||||| | | || || |||| || ||| || Sbjct 63159 AGCGAAGGCAACAAGACGCTGAGCGAATGTG---GATTTCTTGTCCTGAATCCAGCGAAT 63103 Query 117462 TGCCCATTTCGCCTTCTT 117479 |||||| | |||||||| Sbjct 63102 TGCCCACTCGGCCTTCTT 63085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977296989000