Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq322 138 3e-27 seq273 129 1e-24 seq200 120 7e-22 >seq322 Length=957674 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| |||| || || | || || ||| Sbjct 93508 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 93567 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || |||||||| || || ||||| || ||||| || Sbjct 93568 AGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 93627 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| ||||| || ||||| | ||||| Sbjct 93628 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTC 93687 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 93688 CCCGTGAGGGTCTTGACGAAAATCTGCAT 93716 >seq273 Length=2741725 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || || || ||||| |||| || || | ||||| |||||||| Sbjct 1841098 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTG 1841157 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || || |||||||| ||||| || || || ||||| ||||| || Sbjct 1841158 CTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTT 1841217 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| || |||||||| ||| ||| || || ||||| | ||||| || || Sbjct 1841218 CGACTTAACGTTGTCGATGGTGTCAGAAGATTCGACCTCGAGGGTGATAGTCTTGCCGGT 1841277 Query 195117 CAAAGTTTTTACGA 195130 | || || |||| Sbjct 1841278 GAGGGTCTTGACGA 1841291 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| |||| || || | ||||| || Sbjct 1841379 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCA 1841438 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| ||||| || || || |||||||| ||||| || || || ||||| ||| Sbjct 1841439 AGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGGGATTCCCTCCTTGTCCTGA 1841498 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || ||||| || ||| || || || ||||| | ||||| Sbjct 1841499 ATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTG 1841558 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 1841559 CCGGTGAGGGTCTTGACGAAAATCTGCAT 1841587 >seq200 Length=1806557 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | || || | ||||| ||||||||||| || |||||||| Sbjct 889116 TTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 889175 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || |||||||| || ||||| || || ||||| ||||| || |||||| || ||| Sbjct 889176 AGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCA 889235 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 |||||||| || || || |||||||| | ||||| || |||| || || ||||| Sbjct 889236 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 889294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109474847764325