Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq273 95.1 8e-15 seq322 84.2 1e-11 seq200 82.4 5e-11 >seq273 Length=2741725 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| || Sbjct 1841379 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCA 1841438 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || || ||||| | || | ||||||||||| | Sbjct 1841439 AGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGGGATTCCCTCCTTGTCCTGA 1841498 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| ||||| || | ||||| ||| | ||| || |||| ||| ||||| Sbjct 1841499 ATCTTCGACTTGAC--AT--TGTCGATGGTATCAGAAGACTCGACCTCGAGGGTGATGGT 1841554 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||| ||||| || || |||||||| Sbjct 1841555 CTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1841587 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||||| ||| || ||||| ||||| ||||| |||||| | || | || || Sbjct 1840864 AACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTACGGCCGTCTTC 1840923 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| || || || || || |||||||| | || | |||||||| || Sbjct 1840924 AAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTATCCTG 1840983 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| || || | |||| || | || || || | || || || || Sbjct 1840984 GATCTTCGACTTCACATTGTCAATCGTGTCCGATGATTCGACTTCCAGTGTGATAGTCTT 1841043 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||||| ||||| || || ||||||||| Sbjct 1841044 TCCCGTGAGTGTCTTGACGAAAATCTGCATA 1841074 >seq322 Length=957674 Score = 84.2 bits (92), Expect = 1e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || | || || ||||| || ||||| || Sbjct 93526 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 93585 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || ||||| | || | ||||||||||| ||||| |||||| Sbjct 93586 ATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 93645 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| ||| || || || |||||||| ||||| || Sbjct 93646 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGACG 93705 Query 34971 AAGATCTGCATATT 34984 || |||||||| || Sbjct 93706 AAAATCTGCATCTT 93719 >seq200 Length=1806557 Score = 82.4 bits (90), Expect = 5e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| || ||| | || |||| || ||||| || ||||| || || Sbjct 889116 TTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 889175 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || || ||||| | || | ||||||||||| |||||| ||||| | Sbjct 889176 AGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCA 889235 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 || | || || ||| || || | ||| ||||| || ||||| || |||||||| ||| Sbjct 889236 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAG 889295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631720675800