Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq72 114 1e-20 >seq72 Length=1307737 Score = 114 bits (126), Expect = 1e-20 Identities = 273/411 (66%), Gaps = 4/411 (1%) Strand=Plus/Minus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 ||||| || || ||||| ||||| | | ||| | ||| | || | || | |||| Sbjct 1152812 CCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATG 1152753 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | ||| || ||||| ||||||| || | || | | | | ||||| || || Sbjct 1152752 AAGAGATCAGGGATCCATAGAGCTAGGAACAGGTCTCGTGCACGGATCTCTTCCTTTCCG 1152693 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 |||| || ||| || || || || | | ||||| ||||| || || | ||| || Sbjct 1152692 TGATTCTTTCGAAGATCCAGGAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATA 1152633 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | |||| || || || || || || ||||| | |||||||||||| ||||| | Sbjct 1152632 GCAAAGGCACCAGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCAGTGTTGTTGAAC 1152573 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 |||| | ||| |||| || ||||| ||| | || |||||||| | ||| || || Sbjct 1152572 ACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTTCCGGCAATGTACGAGCCT 1152513 Query 48456 CTAGCTCTTATATTACTAA--TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAG 48513 |||| | || || ||| | ||| ||||| |||||||| || || || | | Sbjct 1152512 GTAGCACGAATGCGGTGAACGTTG--AGACCGATACCTCCTGCCATCTTTGAGATCATGG 1152455 Query 48514 CACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATAT 48564 |||| || || ||||| || || || || || || ||||| |||||| Sbjct 1152454 CACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATAT 1152404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105462479000