Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq181 107 2e-18 >seq181 Length=2234860 Score = 107 bits (118), Expect = 2e-18 Identities = 255/385 (66%), Gaps = 18/385 (5%) Strand=Plus/Minus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || || || ||||| | || ||| ||||||||||| || ||| ||| | Sbjct 229302 TGTGGCAGGGGGGCAGCACCATGTTGGGCATGTCCTTGGGGTTCCACGCCGACAGGATCA 229243 Query 30068 TGCGCCTGTCTTCTGGGTT--------GTTCCTG-ATGAGGTCCACGGCGTTTTGCAGCT 30118 | || | ||| | ||||| ||| || ||||| || |||| |||| Sbjct 229242 TCCGGCGGTCGTAAGGGTTCGTGCGGAGTTTGTGGATGAGCTC---GGCG------AGCT 229192 Query 30119 GATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCC 30178 | || || ||| || | |||||| | | | ||| |||||| || || || |||| Sbjct 229191 GGTCGACGCCCTGGCCGGTGTAGTCGGTCTTGGAGTCGACGTACTCGGCCCCAAAGTGCC 229132 Query 30179 TCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT 30238 ||||||||||||||| || || |||||||| ||| | || | || | ||| || Sbjct 229131 GCCACTGGAACCCGTAGACGGGGCCCAGGTCACCCACCTCGCGATGGGTCAGGCCGAGCT 229072 Query 30239 TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCT 30298 |||| | || || | || |||||| ||||||||||||| || |||| |||| |||| Sbjct 229071 TGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCAGATCTTGACGCCCTGCTCGCTGAGCG 229012 Query 30299 CTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAA 30358 | || |||| || || |||||| || ||||| | || ||| | Sbjct 229011 CGAGCGACGATGTGTTGCCCTGGATGAACCAGAGGAGCTCGAGGATGATGGCGCGGTGGA 228952 Query 30359 AGACCCTCTTGGTCGTGAGGAGGGG 30383 |||| | || |||||||||||||| Sbjct 228951 AGACTCGTTTCGTCGTGAGGAGGGG 228927 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825 ||| || || | |||||| | ||| ||||| | | |||| | ||||| || ||||| Sbjct 229604 GGGGAACGGCCGGGGCTCGCGCTCCAGCTGCTCCCTGAGCGCGTTGACGTGGTCGAGGTA 229545 Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAA-ACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 |||||| ||||| |||| | |||| | ||| ||||| | | || |||||| | Sbjct 229544 GACGTGCGCGTCGCCCATGACGTGGGTGAGACTG-CCCGGCACCATGTCGCAGACGTGGG 229486 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | | ||||| ||| || || | ||||||||||||||| || || || || || ||||| | Sbjct 229485 CGAGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGGACGCCCAGGCCCATAT 229426 Query 29945 CCCCCGACCTCTGGTAGAGCTGACA 29969 | | || | |||||| ||||| || Sbjct 229425 CGCAGGAACGCTGGTACAGCTGGCA 229401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615234487175