Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21]
475 sequences; 55,416,396 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq72 179 7e-40
seq272 140 6e-28
>seq72
Length=1307737
Score = 179 bits (198), Expect = 7e-40
Identities = 611/934 (65%), Gaps = 25/934 (3%)
Strand=Plus/Minus
Query 221756 ATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTG 221815
|| ||||| || || || ||| || ||| || ||||||| || || || |||
Sbjct 1153037 ATAATCTCAGTGCAAAGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTA 1152978
Query 221816 CGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGA 221875
|| ||| ||| |||||||| ||||| ||||| |||||||| || || | |||
Sbjct 1152977 CGGTTGCAAGCATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGA 1152918
Query 221876 ATCTTGTCCCAGAGTTCTCTGG-CGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTT 221933
||| || ||| || | ||||| | | | |||| | ||| | |||||| ||| |
Sbjct 1152917 ATCGAGTACCACAGCT-TCTGGGCACGGATCGTC-TGACGACCACGACCCTC---CTTCT 1152863
Query 221934 CATAC--CCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACA 221991
||||| | ||| || || | |||||| || ||||| || ||||||| || ||
Sbjct 1152862 CATACTTCTCGTAAAGGGCCT--CAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCA 1152805
Query 221992 CCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTC 222051
| | || ||||| ||| |||||| || ||| | | || | || ||||||||| ||
Sbjct 1152804 CTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATGAAGAGATC 1152745
Query 222052 CGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTT 222111
|||||||| || || | || || |||| | || ||| ||| |||| || ||
Sbjct 1152744 AGGGATCCATAGAGCTAGGAACAGGTCTCGTGCACGGATCTCTTCCTTTCCGTGATTCTT 1152685
Query 222112 CCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGC 222171
| ||||||| ||||| || | |||| |||||| ||||| ||||||| || | ||
Sbjct 1152684 TCGAAGATCCAGGAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAGGC 1152625
Query 222172 GCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGA 222229
|| || ||||||||||||||||||| || ||| ||| ||| | |||||| | ||
Sbjct 1152624 ACCAGGGCGCTTGTTGCCACCCTGAT-CAACAT-ATCTGGCAGTGTTGTTGAACACTCGC 1152567
Query 222230 AGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCC 222289
|| | || | | ||| |||||| |||||||| || |||||||| || ||
Sbjct 1152566 AGCATGGGGATGATTCCATTGGATGTGCCGTTGGTTCCGGCAATGTACGAGCCTGTAGCA 1152507
Query 222290 C---TCAGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAG 222346
| | ||| | | || | |||||||| || || || ||||||||||| |||
Sbjct 1152506 CGAATGCGGTGA-ACGTTGAGA--CCGATACCTCCTGCCATCTTTGAGATCATGGCACAG 1152450
Query 222347 CTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAA 222406
|||||||||| || ||| || || || ||| ||||| | | | || || ||
Sbjct 1152449 GTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGAAGCAT 1152390
Query 222407 GACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAG 222466
|| || | ||||| | || || || ||| || || || |||||| || || ||||||
Sbjct 1152389 GATGAGAGCTGAGCCTGGGGGGTACCGGCATTGAAGAGAGTGGGAGAAGCATGAGTAAAG 1152330
Query 222467 TAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATC 222526
| | ||||| | ||| ||||| | ||| | | ||||| || || ||
Sbjct 1152329 AACTTGTTGGACATGTAGTTGTAGGTCTCGATGACACGTTCAATGTTATCACCCCAGATA 1152270
Query 222527 TGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGG 222584
|| || | |||| ||||| ||| || | ||| ||| || | |||||
Sbjct 1152269 CCCACAGCAACACGCATGATCATGTGCTGTGGGCGCTCAACAATCTTGCCGTTGAGCT-- 1152212
Query 222585 AGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGC 222644
||| || || || ||||| |||||||| || ||||| | || || |||| |
Sbjct 1152211 TGAGGAGATAGGAACGCTCCAGTGTCTTGAAACCGAAGTACTGATAGTTGAAATCTCGGT 1152152
Query 222645 CGTGAACCACGGCGGCGTCCAGCTCCGACTTGTG 222678
| | || | ||| | ||||||||| ||||||
Sbjct 1152151 CATAGACAATGGCAGAGTCCAGCTCGTCCTTGTG 1152118
Score = 86.0 bits (94), Expect = 1e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| ||||| | || || | | ||| | ||| || ||| | ||
Sbjct 1153656 GTTGACGACCTGGAACTCTCCAGCCAGAACACGTCGGGAGTAGATGTTTGATGTGTAGGG 1153597
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|||| || || |||||||| | |||||||| || |||||||| ||||| || |||||
Sbjct 1153596 CTCGAAGCATTCATTGTTGCCTAAGATCTGAGAGGTACTGGCGGTAGGCATAGGGGCCAC 1153537
Query 221236 CAGCAGACTGTTGCG 221250
||||||||||||||
Sbjct 1153536 GAGCAGACTGTTGCG 1153522
>seq272
Length=795643
Score = 140 bits (154), Expect = 6e-28
Identities = 299/450 (66%), Gaps = 13/450 (3%)
Strand=Plus/Plus
Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936
|||| || || ||||| ||||| || ||||||||||| ||||||||| | || || |||
Sbjct 63140 AGCGTCTTGTTGCCTTCGCTGCCGTTGAGGGCATCTTCTTCAGCGGTGCTTTCGCTTCCA 63199
Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996
|||||||| | ||| || || ||||| || || ||| ||||||||||| |||
Sbjct 63200 TCTTCTGGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCT 63259
Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056
| | ||||||||||| |||| || || || ||||| ||| || | |||| ||
Sbjct 63260 CCCGTGACGAGGGTCTTCACACTGACTTCGCTTGCCTACTCCACTC---CCAC---CTAA 63313
Query 26057 ACAAACCTTC--TCAA-GAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113
|||| | | ||| ||| | | | || ||||||| || || || || ||||
Sbjct 63314 ACAATCGCGCAAGCAAGGAGGTCATTGAGAGCATCATCACTGACGCCGTCACCATTGAGA 63373
Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173
||||||| ||||||||||| || || ||||
Sbjct 63374 AGGAGTTCTTGACCGAGGCTCTTCCTTGCGCCATGCTGGGCATGAACGCCAACCTTATGA 63433
Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACT 26231
|| || || |||| ||| ||||||| ||| ||| ||| || || || || |
Sbjct 63434 AGCAGTATATCGAGTTTGTTGCCGACCGTCTTCTGGTTGC--TCTCGGTAACGACAAGGT 63491
Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291
|||| || ||||||| |||||||| ||||| ||||| || | | || ||||||||
Sbjct 63492 GTACAAGTCGACTAACCCCTTCGACTTCATGGAGAACATTTCCCTTGGCGGCAAGACCAA 63551
Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|||||| || ||| | ||||| ||||| ||
Sbjct 63552 CTTCTTCGAGAAGCGCGTCGGTGACTACCA 63581
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928839284984000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |