Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq72 179 7e-40 seq272 140 6e-28 >seq72 Length=1307737 Score = 179 bits (198), Expect = 7e-40 Identities = 611/934 (65%), Gaps = 25/934 (3%) Strand=Plus/Minus Query 221756 ATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTG 221815 || ||||| || || || ||| || ||| || ||||||| || || || ||| Sbjct 1153037 ATAATCTCAGTGCAAAGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTA 1152978 Query 221816 CGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGA 221875 || ||| ||| |||||||| ||||| ||||| |||||||| || || | ||| Sbjct 1152977 CGGTTGCAAGCATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGA 1152918 Query 221876 ATCTTGTCCCAGAGTTCTCTGG-CGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTT 221933 ||| || ||| || | ||||| | | | |||| | ||| | |||||| ||| | Sbjct 1152917 ATCGAGTACCACAGCT-TCTGGGCACGGATCGTC-TGACGACCACGACCCTC---CTTCT 1152863 Query 221934 CATAC--CCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACA 221991 ||||| | ||| || || | |||||| || ||||| || ||||||| || || Sbjct 1152862 CATACTTCTCGTAAAGGGCCT--CAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCA 1152805 Query 221992 CCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTC 222051 | | || ||||| ||| |||||| || ||| | | || | || ||||||||| || Sbjct 1152804 CTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATGAAGAGATC 1152745 Query 222052 CGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTT 222111 |||||||| || || | || || |||| | || ||| ||| |||| || || Sbjct 1152744 AGGGATCCATAGAGCTAGGAACAGGTCTCGTGCACGGATCTCTTCCTTTCCGTGATTCTT 1152685 Query 222112 CCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGC 222171 | ||||||| ||||| || | |||| |||||| ||||| ||||||| || | || Sbjct 1152684 TCGAAGATCCAGGAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAGGC 1152625 Query 222172 GCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGA 222229 || || ||||||||||||||||||| || ||| ||| ||| | |||||| | || Sbjct 1152624 ACCAGGGCGCTTGTTGCCACCCTGAT-CAACAT-ATCTGGCAGTGTTGTTGAACACTCGC 1152567 Query 222230 AGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCC 222289 || | || | | ||| |||||| |||||||| || |||||||| || || Sbjct 1152566 AGCATGGGGATGATTCCATTGGATGTGCCGTTGGTTCCGGCAATGTACGAGCCTGTAGCA 1152507 Query 222290 C---TCAGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAG 222346 | | ||| | | || | |||||||| || || || ||||||||||| ||| Sbjct 1152506 CGAATGCGGTGA-ACGTTGAGA--CCGATACCTCCTGCCATCTTTGAGATCATGGCACAG 1152450 Query 222347 CTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAA 222406 |||||||||| || ||| || || || ||| ||||| | | | || || || Sbjct 1152449 GTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGAAGCAT 1152390 Query 222407 GACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAG 222466 || || | ||||| | || || || ||| || || || |||||| || || |||||| Sbjct 1152389 GATGAGAGCTGAGCCTGGGGGGTACCGGCATTGAAGAGAGTGGGAGAAGCATGAGTAAAG 1152330 Query 222467 TAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATC 222526 | | ||||| | ||| ||||| | ||| | | ||||| || || || Sbjct 1152329 AACTTGTTGGACATGTAGTTGTAGGTCTCGATGACACGTTCAATGTTATCACCCCAGATA 1152270 Query 222527 TGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGG 222584 || || | |||| ||||| ||| || | ||| ||| || | ||||| Sbjct 1152269 CCCACAGCAACACGCATGATCATGTGCTGTGGGCGCTCAACAATCTTGCCGTTGAGCT-- 1152212 Query 222585 AGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGC 222644 ||| || || || ||||| |||||||| || ||||| | || || |||| | Sbjct 1152211 TGAGGAGATAGGAACGCTCCAGTGTCTTGAAACCGAAGTACTGATAGTTGAAATCTCGGT 1152152 Query 222645 CGTGAACCACGGCGGCGTCCAGCTCCGACTTGTG 222678 | | || | ||| | ||||||||| |||||| Sbjct 1152151 CATAGACAATGGCAGAGTCCAGCTCGTCCTTGTG 1152118 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| ||||| | || || | | ||| | ||| || ||| | || Sbjct 1153656 GTTGACGACCTGGAACTCTCCAGCCAGAACACGTCGGGAGTAGATGTTTGATGTGTAGGG 1153597 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || || |||||||| | |||||||| || |||||||| ||||| || ||||| Sbjct 1153596 CTCGAAGCATTCATTGTTGCCTAAGATCTGAGAGGTACTGGCGGTAGGCATAGGGGCCAC 1153537 Query 221236 CAGCAGACTGTTGCG 221250 |||||||||||||| Sbjct 1153536 GAGCAGACTGTTGCG 1153522 >seq272 Length=795643 Score = 140 bits (154), Expect = 6e-28 Identities = 299/450 (66%), Gaps = 13/450 (3%) Strand=Plus/Plus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| || || ||||| ||||| || ||||||||||| ||||||||| | || || ||| Sbjct 63140 AGCGTCTTGTTGCCTTCGCTGCCGTTGAGGGCATCTTCTTCAGCGGTGCTTTCGCTTCCA 63199 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||| | ||| || || ||||| || || ||| ||||||||||| ||| Sbjct 63200 TCTTCTGGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCT 63259 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | | ||||||||||| |||| || || || ||||| ||| || | |||| || Sbjct 63260 CCCGTGACGAGGGTCTTCACACTGACTTCGCTTGCCTACTCCACTC---CCAC---CTAA 63313 Query 26057 ACAAACCTTC--TCAA-GAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113 |||| | | ||| ||| | | | || ||||||| || || || || |||| Sbjct 63314 ACAATCGCGCAAGCAAGGAGGTCATTGAGAGCATCATCACTGACGCCGTCACCATTGAGA 63373 Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173 ||||||| ||||||||||| || || |||| Sbjct 63374 AGGAGTTCTTGACCGAGGCTCTTCCTTGCGCCATGCTGGGCATGAACGCCAACCTTATGA 63433 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACT 26231 || || || |||| ||| ||||||| ||| ||| ||| || || || || | Sbjct 63434 AGCAGTATATCGAGTTTGTTGCCGACCGTCTTCTGGTTGC--TCTCGGTAACGACAAGGT 63491 Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 |||| || ||||||| |||||||| ||||| ||||| || | | || |||||||| Sbjct 63492 GTACAAGTCGACTAACCCCTTCGACTTCATGGAGAACATTTCCCTTGGCGGCAAGACCAA 63551 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||| || ||| | ||||| ||||| || Sbjct 63552 CTTCTTCGAGAAGCGCGTCGGTGACTACCA 63581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839284984000