Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq72 251 9e-62 seq272 87.8 2e-12 >seq72 Length=1307737 Score = 251 bits (278), Expect = 9e-62 Identities = 1164/1819 (64%), Gaps = 61/1819 (3%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATCCTCA 75203 ||||| ||| |||| || || ||| |||||| |||| |||| | |||| | Sbjct 1152172 TACTTCGGTTTCAAGACACTGGAGCGTTCCTATCTCCTCAA--GCTCAACGGCAAGATTG 1152229 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || ||||||| ||||| ||||||| || || | || ||| || || |||||| Sbjct 1152230 TTGAGCGCCCACAGCACATGATCATGCGTGTTGCTGTGGGTATCTGGGGTGATAACATTG 1152289 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCA 75322 | |||| | ||||| ||| || | |||||| | | || | || | ||| || | || Sbjct 1152290 AACGTGTCATCGAGACCTACAACTACATGTCCAACAAGT-TCTTTACTCATGCTTCTCCC 1152348 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 || ||||||||||| ||||| || | ||| | || ||||||||| ||| | Sbjct 1152349 ACTCTCTTCAATGCCGGTACCCCCCAGGCTCAGCTCTCATCATGCTTCCTTGTCGATATG 1152408 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||| ||| || |||||||||| | ||||| | | ||||| ||||||||| Sbjct 1152409 AAGGATGACAGCATTGACGGTATCTACGATACTCTCAAGACCTGTGCCATGATCTCAAAG 1152468 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTC 75500 ||| || ||||| || | || | || | | || | | |||||| || Sbjct 1152469 ATGGCAGGAGGTATCGGTCTCAACGTTCACCGCATTCGTGCTAC--AGGCTCGTACATTG 1152526 Query 75501 GGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 75560 || || || || ||| |||| || || || ||||| || || || ||| ||| | Sbjct 1152527 CCGGAACCAACGGCACATCCAATGGAATCATCCCCATGCTGCGAGTGTTCAACAACACTG 1152586 Query 75561 CGCGCTATGTAAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAA 75616 | | ||||| |||| | | ||| | || || || | || |||| | || Sbjct 1152587 CCAGATATGTTGATCAGG-GTGGCAACAAGCGCCCTGGTGCCTTTGCTATCTATCTCGAG 1152645 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 || ||||| | ||| || | |||||||| || | ||| || || || | |||||| Sbjct 1152646 CCCTGGCACTCTGATGTCTTCGAGTTCCTGGATCTTCGAAAGAATCACGGAAAGGAAGAG 1152705 Query 75677 GCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 || ||| | |||| || || | | || ||||| || || || ||||||||||| || Sbjct 1152706 A-TCCGTGCACGAGACCTGTTCCTAGCTCTATGGATCCCTGATCTCTTCATGAAGCGCGT 1152764 Query 75736 TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGC 75795 |||| || | | ||| |||| | || || || || || || || | ||| Sbjct 1152765 TGAGAAGAACGAGAACTGGACTCTCATGTGCCCTAACGAGTGCCCTGGCCTGGCTGACTG 1152824 Query 75796 GGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGC 75855 || ||||||||||| ||||| ||| |||||||| |||||||| | | | Sbjct 1152825 CTACGGCGAGGAGTTTGAGGCCCTTTACGAGAAGTATGAGAAGGAGGGTCGTGGTCGTCA 1152884 Query 75856 GACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 ||| | | ||| | || | | ||| | | |||||| || | || || |||||||| | Sbjct 1152885 GACGATCCGTGCC-CAGAAGCTGTGGTACTCGATTCTCGAAGCCCAAACCGAGACTGGTA 1152943 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 || | |||||||||||||||||||| ||| ||||| ||||| ||||| |||| | Sbjct 1152944 ACCCCTTCATGCTTTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACCTGGGTA 1153003 Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034 | ||| ||||| ||||||||||| || ||| | || ||| | | |||||| | Sbjct 1153004 CTATCCGCAGCTCCAATCTTTGCACTGAGATTATTGAATACTGCGCTCCCGATGAGGTTG 1153063 Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTT 76094 |||||||||| |||| || | || || || || || || | || || | Sbjct 1153064 CTGTTTGCAACCTGGCTTCGCTGGCTCTGCCCGCCTACGTTGATTACGACGAGGGCTGCT 1153123 Query 76095 TTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCA 76154 | | | | || || || ||| | ||| | || | || || ||||| ||| Sbjct 1153124 ACAACTTTAAGAAGCTCCACGAAGTTACACGGGTTATCGTGCGTAACCTGAACCGTATCA 1153183 Query 76155 TTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTA 76214 | || || | || |||||| || || || || || ||||| || |||| | Sbjct 1153184 TCGATGTCAACTACTACCCCGTTCAGGAGGCACGCAACAGCAACATGCGTCATCGACCCA 1153243 Query 76215 TTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA-----TT 76269 ||||| | |||||||| ||||| || |||| | || || | ||||||| || Sbjct 1153244 TTGGTCTTGGTGTTCAGGGTCTTGCAGATGCA-----TTCTTGGCTCTACGCATGCCTTT 1153298 Query 76270 TGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATC 76329 || || ||| || || | || | ||||| || || || || || || | Sbjct 1153299 CGAGTCGCCTGAGGCTCGTCAGCTAAACAAGCAGATCTTCGAGACTATCTACCATGCCGC 1153358 Query 76330 CCT---GGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGG 76386 ||| ||| | | || ||| | || | | |||||| |||| |||| || |||| Sbjct 1153359 CCTTACTGAGTCCA--TG-GAACTCGCGAAGGAGCAAGGTCCCTACCAGACCTTCAAGGG 1153415 Query 76387 TTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAA 76446 || || || || | || | |||||||| || |||| |||| || | || || | Sbjct 1153416 ATCCCCAGCTTCAGAGGGAATCCTTCAGTTCGACATGT-GGAATGT-CACCCCCTCTGAC 1153473 Query 76447 C--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 76504 | | || ||||| || || | ||||||||| | ||| | || |||||||| Sbjct 1153474 CTTTGGGAGTGGGAGACCCTTCGAGAGCAGATCAAGGAGCACGGTATCCGCAACAGTCTG 1153533 Query 76505 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 76564 | |||| || ||||| || ||| ||| | || ||||| || || ||||||||||| Sbjct 1153534 CTCGTGGCCCCTATGCCTACCGCCAGTACCTCTCAGATCTTAGGCAACAATGAATGCTTC 1153593 Query 76565 GAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTC 76624 || || |||||| ||||||||||| || | || || || ||||| | ||| Sbjct 1153594 GAGCCCTACACATCAAACATCTACTCCCGACGTGTTCTGGCTGGAGAGTTCCAGGTCGTC 1153653 Query 76625 AACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGAT 76684 ||| ||| | || || || || | || | |||||| | | |||||| | Sbjct 1153654 AACCCCTGGCTCTTGAAAGATCTTGTTGAGTTGGGCTTGTGGTCCGATGCCATGAAGAAC 1153713 Query 76685 C---TCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATAT 76740 | ||| || ||| | ||||| || ||||| || | | ||||| ||||| | Sbjct 1153714 CGAATCATTGCTGA----GCAAGGTTCGATCCAAAACATTCCCAACATCCCTGATGACCT 1153769 Query 76741 CAAGAATCTCTACCGCACAGTGTGGGAAA----TCAAGATGAAAGATGTCATTGACATGG 76796 |||| ||||||| || || ||||| | |||| | || || | | |||| Sbjct 1153770 CAAGGCTCTCTACAAGACCGTCTGGGAGATTTCTCAACGTCAA----GTTGTGCAGATGG 1153825 Query 76797 CCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGA--ATCTATTCATGGAAAG 76854 |||| ||||| ||| |||||||| ||| |||| | | | ||| || ||| | Sbjct 1153826 CCGCCGATCGAGGTGCTTTCATTGACCAATCTCAATCTCTCAACATCCAT--ATGAAGGA 1153883 Query 76855 TCCAACGATGTCCAAGCTCTCTTCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAA 76913 ||| | ||| |||| | | |||||| | || || ||||||| |||||| || | Sbjct 1153884 TCCCTCAATGGGCAAGATTACCAGTATGCACTTTGCTGGC-TGGAAACTGGGGCTTAAGA 1153942 Query 76914 CCGGAATGTACTATCTCCG 76932 | || ||||||||||| || Sbjct 1153943 CTGGCATGTACTATCTTCG 1153961 >seq272 Length=795643 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGTCTCGCTCCTTCGCCGAG 65079 |||||||| | |||||||| ||| || |||| || || | | ||||| || Sbjct 63085 AAGAAGGCCGAGTGGGCAATTCGCTGGATTCAGGACAAGAAATC---CACATTCGCTCAG 63141 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || ||| |||| || || || ||||| ||||||||| ||| | ||| | || Sbjct 63142 CGTCTTGTTGCCTTCGCTGCCGTTGAGGGCATCTTCTTCAGCGGTGCTTTCGCTTCCATC 63201 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | |||||||||||||| ||||| ||||| || || |||||| || || || || ||| Sbjct 63202 TTCTGGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCC 63261 Query 65200 CGAGATGAGGGTCTCCAC 65217 || || |||||||| ||| Sbjct 63262 CGTGACGAGGGTCTTCAC 63279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566057868000