Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq72 165 2e-35 seq102 107 6e-18 seq132 89.7 2e-12 >seq72 Length=1307737 Score = 165 bits (182), Expect = 2e-35 Identities = 556/860 (65%), Gaps = 7/860 (1%) Strand=Plus/Minus Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCAC 155651 || ||||| || || || ||| ||| | | ||| |||||| | ||||||| ||| Sbjct 1153082 GAAGCCAGGTTGCAAACAGCAACCTCATCGGGAGCGCAGTATTCAATAATCTCAGTGCAA 1153023 Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 || || || || ||| || || | ||||||||||| |||| ||| ||||||||| Sbjct 1153022 AGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCC 1152963 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGG 155771 ||||| || ||| | ||| | || ||||| | || || || |||||| ||| || Sbjct 1152962 TTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGAATCGAGTACCACAGC 1152903 Query 155772 TCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTT 155831 | ||||| || || | || ||| |||||| ||| || || | Sbjct 1152902 TTCTGGGCACGGATCGTCTGACGACCACGACCCTCCTTCTCATACTTCTCGTAAAGGGCC 1152843 Query 155832 CGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGAC 155891 | ||||| ||||| || ||| ||| |||||||||| | ||||| | || | | Sbjct 1152842 TCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAGAGTC 1152783 Query 155892 CAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAA 155951 || | | || || |||| ||| || | |||| ||| | ||| ||| Sbjct 1152782 CAGTTCTCGTTCTTCTCAACGCGCTTCATGAAGAGATCAGGGATCCATAGAGCTAGGAAC 1152723 Query 155952 AGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCA 156011 ||||| | ||| ||| || | ||||||||||| || || || | ||| || Sbjct 1152722 AGGTCTCGTGCACGGATCTCTTCCTTTCCGTGATTCTTTCGAAGATCCAGGAACTCGAAG 1152663 Query 156012 ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCC 156068 | ||||| || ||||| ||||| |||||||| |||| | |||| |||||| Sbjct 1152662 ACATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGGCGCTTGTTGCCACCC 1152603 Query 156069 TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAA 156128 ||||| ||||| | ||||| || ||||| || | ||||| || || || |||||||| Sbjct 1152602 TGATCAACATATCTGGCAGTGTTGTTGAACACTCGCAGCATGGGGATGATTCCATTGGAT 1152543 Query 156129 GTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCA 156188 ||||| ||||||||| ||| | ||| || | | |||| |||| | || || Sbjct 1152542 GTGCCGTTGGTTCCGGCAATGTACGAGCCTGTAGCACGAATGCGGTGAACGTTGAGACCG 1152483 Query 156189 ATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTC 156247 ||||| |||| |||| || || || || || ||| | ||||| | | ||||| || Sbjct 1152482 ATACCTCCTG-CCATCTTTGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATACCGTC 1152424 Query 156248 AATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCC 156307 ||| ||||| | ||| | || |||| || | |||| | || || || Sbjct 1152423 AATGCTGTCATCCTTCATATCGACAAGGAAGCATGATGAGAGCTGAGCCTGGGGGGTACC 1152364 Query 156308 AGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGT 156367 || ||||| || || || | |||||| |||| |||| || ||||| || | ||| || Sbjct 1152363 GGCATTGAAGAGAGTGGGAGAAGCATGAGTAAAGAACTTGTTGGACATGTAGTTGTAGGT 1152304 Query 156368 CTCCTTAATCTTCTCAAGATTA-GACCCGTGAATACAGATAGAGACCCTCATCCACATAT 156426 ||| | | |||| ||| |||| | |||| | || || | ||| ||| | Sbjct 1152303 CTCGATGACACGTTCAATGTTATCACCCCAG-ATACCCACAGCAACACGCATGATCATGT 1152245 Query 156427 GCTGAGGACGCTCTACAATC 156446 |||| || ||||| |||||| Sbjct 1152244 GCTGTGGGCGCTCAACAATC 1152225 >seq102 Length=1283250 Score = 107 bits (118), Expect = 6e-18 Identities = 215/315 (68%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||| | | ||||| | |||||| |||||||||||||| || || || || || Sbjct 220876 TCTTCGAGAGCCTTGACGAGACGACGTTGAATATAACCAGTCTCAGCAGTCTTGACTGCA 220817 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTC--TTCCGGTCGTA 302689 |||||||| ||||| | | |||| |||| || |||||||| | || | |||| | Sbjct 220816 GTATCAATAAGACCTTCTCTACCAGCCATGGCGTGGAAGAAGAATTCGGATGGGGTC--A 220759 Query 302690 GCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG 302749 | || | || | ||| | |||||||| ||||| || || || || | || ||||| Sbjct 220758 GACCACGAAGGTATGAGTTTTCAACGAATCCACGAGCTTCAGGAGAGTAATCATCCTTGG 220699 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 | ||||| |||| || | || | | ||| | || |||||||| || || || ||| Sbjct 220698 TGAAGTGCGGCAATGTGCGGTAGTTGAAACCGAAGGGAATACGCTTACCCTCCACCATCT 220639 Query 302810 GCTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCCAGC 302867 ||||||||| | | |||||| || || || || || | ||||| ||||||| Sbjct 220638 GCTGTCCCACCAAGGCGGACATCTGAGAGATGTTGATAGATGA--TCCCTTTGAGCCAGA 220581 Query 302868 ATTTACCATAATAAC 302882 | | |||| |||| Sbjct 220580 ACTGGCCATGGTAAC 220566 >seq132 Length=1352002 Score = 89.7 bits (98), Expect = 2e-12 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| ||||| |||||||||||||| || | || |||| || | || | || Sbjct 702719 CCAATGGCATCGATTTCGTCAATGAAGATAATGCAAGGAGCGTTCTTCCTTCCCTCCGCG 702660 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | |||| |||||| |||| || | ||||||| |||||||||||||||| ||| || Sbjct 702659 AAGAGGTCTCGTACACGAGATGGACCGACACCAACAAACATTTCTACAAATTCGGAACCG 702600 Query 289150 GATAC-TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || |||| ||| | || || || ||||| ||| | || ||||| ||||| Sbjct 702599 CTGACGCTGAA-GAAGGGCACGCCTGACTCTCCTGCAGTAGCCTTGGCAAGAAGAGTCTT 702541 Query 289209 ACCTGTTCCAGGTGGTCC 289226 ||| |||||||| || || Sbjct 702540 ACCGGTTCCAGGAGGCCC 702523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471808642610075