Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11 143 3e-28 seq272 114 2e-19 seq135 89.7 6e-12 seq273 86.0 8e-11 >seq11 Length=878243 Score = 143 bits (158), Expect = 3e-28 Identities = 97/109 (89%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||||||||||||| ||||||||||| |||| |||||| | || || ||| Sbjct 367902 GCTGCAAACTACCTCGACATCAAGGCTCTGCTCGATGTTGGCTGCAAGACCGTCGCTAAC 367961 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| || |||||||||||||||||||| ||||||| Sbjct 367962 ATGATCAAGGGCAAGTCTCCTGAGGAGATCCGCAAGACCTTCAACATCA 368010 >seq272 Length=795643 Score = 114 bits (126), Expect = 2e-19 Identities = 173/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || |||||| |||||| |||||||||||||| | || || || Sbjct 63587 GCCTTCTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAAATG 63528 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||| | || |||||| ||| ||| ||||| | | Sbjct 63527 TTCTCCATGAAGTCGAAGGGGTTAGTCGACTTGTACACCTTGTCGTTACCGAGAGCAACC 63468 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || |||||||| ||||||||||| ||||| ||| ||| |||||||||||| | Sbjct 63467 AGAAGACGGTCGGCAACAAACTCGATATACTGCTTCATAAGGTTGGCGTTCATGCCCAGC 63408 Query 868871 A--GCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 | |||| | || || | |||| ||| ||||| ||||| || |||||| || || Sbjct 63407 ATGGCGCAA--GGAAGAGCCTCGGTCAAGAACTCCTTCTCAATGGTGACGGCGTCAGTGA 63350 Query 868929 TGAT 868932 |||| Sbjct 63349 TGAT 63346 >seq135 Length=1329384 Score = 89.7 bits (98), Expect = 6e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1726964 CCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCG 1727023 ||||||| |||||||||| || | || |||||||| |||||||| ||||| ||||| ||| Sbjct 933975 CCGTCGATGTCGGGGTCGTTGACGAGACCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCG 934034 Query 1727024 ACATAGGCGCGCATGAC 1727040 | |||||||||||||| Sbjct 934035 AGGTAGGCGCGCATGAC 934051 >seq273 Length=2741725 Score = 86.0 bits (94), Expect = 8e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154 ||||| |||||||| |||||||||||| | ||||| | |||||||| || ||| |||| Sbjct 80776 GGCCTAGGCGAGCCATGCTTTGACAAGCTTGAGGCTACTCTCGCCCATGCTATGATGTCT 80717 Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 || || || || ||||| || ||||||||| Sbjct 80716 ATTCCTGCTACGAAGGGCTTTGAGATTGGC 80687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107100219275575