Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11 125 1e-22 seq181 113 7e-19 seq132 104 4e-16 seq135 95.1 2e-13 seq272 93.3 7e-13 >seq11 Length=878243 Score = 125 bits (138), Expect = 1e-22 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || || |||||||||||||||||| | || |||||| | || ||||||||||| || ||| Sbjct 367902 GCTGCAAACTACCTCGACATCAAGGCTCTGCTCGATGTTGGCTGCAAGACCGTCGCTAAC 367961 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| || ||||| |||||||||||||| ||||||| Sbjct 367962 ATGATCAAGGGCAAGTCTCCTGAGGAGATCCGCAAGACCTTCAACATCA 368010 >seq181 Length=2234860 Score = 113 bits (124), Expect = 7e-19 Identities = 79/90 (88%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||||||||| |||||||||||| |||| ||||| ||| ||| Sbjct 1050804 GTACTTGGTGACGGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCGAGTTCACCGGGCAG 1050745 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 ||||||||| || | |||||| || ||||| Sbjct 1050744 GATCAGGCGAACAGAGGTCTGAATTTCGCG 1050715 >seq132 Length=1352002 Score = 104 bits (114), Expect = 4e-16 Identities = 227/338 (67%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 2019105 GAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATC 2019164 || |||||||| || |||||||| |||||||| || | || ||||| || | ||| Sbjct 510716 GAAGCCGTGCTGGAGCTCAATGCCAGTGACGAGCGTGGTATTGATGTCGTCCGAA--ATC 510659 Query 2019165 --ATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCA 2019222 |||||| | || ||| | || |||| | || | ||||| || ||| Sbjct 510658 GTATCAAGGGTTTTGCACAGAAGAAGGTCACATTGCCAGCTGGGAGACACAAATTGGTCA 510599 Query 2019223 TCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGG 2019282 |||| |||||||| ||| || | || || | || |||||||| || | ||| |||| Sbjct 510598 TCCTTGATGAGGCTGACAGCATGACCTCCGGAGCGCAGCAGGCACTGAGGCGGACGATGG 510539 Query 2019283 AAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCG 2019342 ||| ||| |||||||||| |||||||| | || ||||| || | |||| | Sbjct 510538 AAATCTACTCCAACACGACACGGTTTGCCTTTGCTTGCAATCAATCCAACAAAATCATTG 510479 Query 2019343 AAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAGATCG 2019402 || | |||||| | ||||||||| |||| | || || ||||| || || ||| Sbjct 510478 AACCTCTCCAGTCAAGATGCGCCATCCTGCGGTACGCAAAGCTGACCGATGCGCAAGTCG 510419 Query 2019403 CCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGTC 2019440 |||||| |||| ||||| |||||||||||| Sbjct 510418 TTAAGCGTCTCATGCAGATCATCGAAGCCGAAAAGGTC 510381 >seq135 Length=1329384 Score = 95.1 bits (104), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 2175309 CCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCG 2175368 ||||||| |||||||||| || | || |||||||| |||||||| ||||| ||||| ||| Sbjct 933975 CCGTCGATGTCGGGGTCGTTGACGAGACCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCG 934034 Query 2175369 ACATAGGCGCGCATGACCACCAGGAGAGCGTC 2175400 | |||||||||||||| | || ||| |||| Sbjct 934035 AGGTAGGCGCGCATGACGATCACGAGCTCGTC 934066 >seq272 Length=795643 Score = 93.3 bits (102), Expect = 7e-13 Identities = 173/252 (69%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || |||||| |||||| |||||||||||||| | | Sbjct 63595 TGACACCGGCCTTCTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAA 63536 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | || || |||||| | ||| ||||| | || | ||| ||| ||| |||| Sbjct 63535 GGGAAATGTTCTCCATGAAGTCGAAGGGGTTAGTCGACTTGTACACCTTGTCGTTACCGA 63476 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | || || |||||||| || || || || ||||| ||| ||| |||||||| Sbjct 63475 GAGCAACCAGAAGACGGTCGGCAACAAACTCGATATACTGCTTCATAAGGTTGGCGTTCA 63416 Query 794071 TGCCGATGA--GCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||| | | |||| | || || | |||| | | ||||| ||||| || |||||| Sbjct 63415 TGCCCAGCATGGCGCAA--GGAAGAGCCTCGGTCAAGAACTCCTTCTCAATGGTGACGGC 63358 Query 794129 CTCGATGATGAT 794140 || ||||||| Sbjct 63357 GTCAGTGATGAT 63346 Score = 91.5 bits (100), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 ||||||| ||| |||||||||||||| ||||||||||| ||||||||||| || || | Sbjct 62977 TCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCCGAGTGGATGTTCTCCATCATG 62918 Query 794647 ATCTGGAAGCCATAAAAGCA 794666 |||||||| || || ||||| Sbjct 62917 ATCTGGAATCCGTAGAAGCA 62898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916195872083525