Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq322 136 4e-27 seq273 123 2e-23 seq272 104 2e-17 seq200 102 8e-17 >seq322 Length=957674 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| | ||| |||||||||||||||||| Sbjct 93519 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 93578 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||| |||||||| |||||||| |||||||| |||||| ||| Sbjct 93579 GGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 93638 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| |||| ||||| || || || || || || Sbjct 93639 GACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTGAGGGT 93698 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 93699 CTTGACGAAAATCTGCAT 93716 >seq273 Length=2741725 Score = 123 bits (136), Expect = 2e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| | ||| | | | ||||| |||||||| | Sbjct 1841390 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCCTCAAGCTGCTTAC 1841448 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || ||||| ||||| |||||||| || |||||||| ||||| || Sbjct 1841449 CAGCGAAAATCAGGCGCTGTTGGTCAGGAGGGATTCCCTCCTTGTCCTGAATCTTCGACT 1841508 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || || | | ||| || |||| ||||| ||| |||||||| || | Sbjct 1841509 TGACATTGTCGATGGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGG 1841568 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||||||||||||| Sbjct 1841569 TCTTGACGAAAATCTGCATG 1841588 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| ||| | ||| | | | |||||||| Sbjct 1841096 AAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCCTCGAG 1841154 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || || ||||| |||||||||||||| || |||||||| || Sbjct 1841155 CTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAAT 1841214 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | ||||| | | || || |||| ||||| || ||||| Sbjct 1841215 CTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGACCTCGAGGGTGATAGTCTTGCC 1841274 Query 133634 GGTCAGAGTTTTTACGA 133650 ||| || || || |||| Sbjct 1841275 GGTGAGGGTCTTGACGA 1841291 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||||||||| ||||| || ||||| || | || ||| ||| || |||||||| Sbjct 1840876 GGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGT--ACGGCCGTCTTCAAGCTGCTTT 1840933 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||| ||||||||||| ||||| || || ||||| || |||||| | Sbjct 1840934 CCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTATCCTGGATCTTCGAC 1840993 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | |||| |||||| | | || || || | |||| || || || || || Sbjct 1840994 TTCACATTGTCAATCGTGTCCGATGATTCGACTTCCAGTGTGATAGTCTTTCCCGTGAGT 1841053 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || |||||||||||||| Sbjct 1841054 GTCTTGACGAAAATCTGCAT 1841073 >seq272 Length=795643 Score = 104 bits (114), Expect = 2e-17 Identities = 334/510 (65%), Gaps = 15/510 (3%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || |||||||| ||||| || ||||| || ||||| | | |||||||| | Sbjct 63582 CTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAAATGTTCTC 63523 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTT--AAAGTATTTCGGCTGGCCCAACTGTACGAGC 120468 ||| || ||||| ||||| ||| || | | | ||| | || | || || Sbjct 63522 CATGAAGTCGAAGGGGTTAGTCGACTTGTACACCTTGTCG--TTACCGAGAGCAACCAGA 63465 Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAAC 120528 || ||||| || |||||||| || |||| ||| | |||||||||||||||| Sbjct 63464 AGACGGTCGGCAACAAACTCGATATACTGCTTCATAAGGTTGGCGTTCATGCCCAGCATG 63405 Query 120529 GCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 || || | ||| || || ||||||||||||||| || || || ||| ||| Sbjct 63404 GCGCAAGGAAGAGCCTCGGTCAAGAACTCCTTCTCAATGGTGACGGCGTCAGTGATGATG 63345 Query 120589 G---CGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCAC 120645 | | | | || | |||| || | || | || | |||| |||| Sbjct 63344 CTCTCAATGACCTCCTTGCTTGCGCGATTGT-TTAGGTGGGAGT---GGAGTA--GGCAA 63291 Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705 || ||||| ||||| || |||||||| || || |||||||||||| || || || || Sbjct 63290 GCGAAGTCAGTGTGAAGACCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCA 63231 Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGC-AAAGCTGCCCGAAAAGAACAC 120764 ||||| | || | |||| | |||| |||| || ||||| || ||||| | Sbjct 63230 GGCATCAGACCACGCTTCTTCAACCAGAAGATGGAAGCGAAAGC-ACCGCTGAAGAAGAT 63172 Query 120765 GCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGAT 120824 |||||| ||| || ||||| || | |||| || || || | ||||| | || Sbjct 63171 GCCCTCAACGGCAGCGAAGGCAACAAGACGCTGAGCGAATGTGGATTTCTTGTCCTGAAT 63112 Query 120825 CCACTTCATGGCCCACTCGGCCTTTTTGCG 120854 ||| || |||||||||||||| ||||| Sbjct 63111 CCAGCGAATTGCCCACTCGGCCTTCTTGCG 63082 >seq200 Length=1806557 Score = 102 bits (112), Expect = 8e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | || || ||||| ||||| || || || || |||||| Sbjct 889149 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTG 889208 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | |||| ||||||| || ||| || || | ||||| | Sbjct 889209 TCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTGATG 889268 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651 || ||||| ||||| || || ||||| Sbjct 889269 GTCTTGCCCGTCAGGGTCTTCACGAA 889294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417929689000