Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq72 120 7e-22 >seq72 Length=1307737 Score = 120 bits (132), Expect = 7e-22 Identities = 318/485 (66%), Gaps = 3/485 (1%) Strand=Plus/Plus Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579 || ||||| ||| | | || || ||||| ||||| ||||| || ||| |||| || Sbjct 1152388 TCATGCTTCCTTGTCGATATGAAGGATGACAGCATTGACGGTATCTACGATACTCTCAAG 1152447 Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGC 110639 ||| | || || || | | ||||| || ||| | ||||||| ||||| Sbjct 1152448 ACCTGTGCCATGATCTCAAAGATGGCAGGAGGTATCGGTCTCAACGTTCACCGCATTCGT 1152507 Query 110640 TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTA 110699 | | ||| | | || || | | || || | || | |||| | | || ||| | Sbjct 1152508 GCTACAGGCTCGTACATTGCCGGAACCAACGGCACATCCAATGGAATCATCCCCATGCTG 1152567 Query 110700 AGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCA 110756 |||| |||||| ||||||| | |||||| |||| ||||| || | | ||| | Sbjct 1152568 CGAGTGTTCAACAACACTGCCAGATATGTTGATCAGGGTGGCAACAAGCGCCCTGGTGCC 1152627 Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 ||||||||||||||||| || ||||| || ||| | || || ||| | || ||||| || Sbjct 1152628 TTTGCTATCTATCTCGAGCCCTGGCACTCTGATGTCTTCGAGTTCCTGGATCTTCGAAAG 1152687 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 ||||| ||| ||||| | ||||| || | || || | ||||| | ||| Sbjct 1152688 AATCACGGAAAGGAAGAGATCCGTGCACGAGACCTGTTCCTAGCTCTATGGATCCCTGAT 1152747 Query 110877 TTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCT 110936 | |||||||| || ||| | | || | | ||| |||| ||||| ||| | | Sbjct 1152748 CTCTTCATGAAGCGCGTTGAGAAGAACGAGAACTGGACTCTCATGTGCCCTAACGAGTGC 1152807 Query 110937 CCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAA 110996 ||||| || |||| || || | |||||||| | ||||||||| || ||||| || Sbjct 1152808 CCTGGCCTGGCTGACTGCTACGGCGAGGAGTTTGAGGCCCTTTACGAGAAGTATGAGAAG 1152867 Query 110997 GAAGG 111001 || || Sbjct 1152868 GAGGG 1152872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186805577131475