Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq72 113 4e-20 seq272 93.3 4e-14 >seq72 Length=1307737 Score = 113 bits (124), Expect = 4e-20 Identities = 604/943 (64%), Gaps = 34/943 (4%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || ||||| || ||||| ||||||| | || | || ||| | ||| Sbjct 1153655 TTGACGACCTGGAACTCTCCAGCCAGAACACGTCGGGAGTAGATGTTTGATGTGTAGGGC 1153596 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || | ||||| |||||||| || || | || | ||||||||||| ||||| Sbjct 1153595 TCGAAGCATTCATTGTTGCCTAAGATCTGAGAGGTACTGGCGGTAGGCATAGGGGCCACG 1153536 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAG--TTTGCCAGTCCC 147070 | || || || | ||||| | | ||| | || || ||| | | ||| |||| Sbjct 1153535 AGCAGACTGTTGCGGATACCGTGCTCCTTGATCTGCTC--TCGAAGGGTCTCCCACTCCC 1153478 Query 147071 ACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCC-TC-GA--CTGGCG 147126 | | ||||| || || |||||||||||| |||| || | ||| || || |||| Sbjct 1153477 AAAGGTCAGAGGGGGTGACATTCCACATGTCGAACTGAAGGATTCCCTCTGAAGCTGG-- 1153420 Query 147127 GGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCG 147186 ||| || ||| || |||| || | || ||| | ||| || | | ||| Sbjct 1153419 GGAT--CCCTTGAAGGTCTGGTAGGGACCTTGCTCCTTCGCGAGTTC-CA--TGGACTCA 1153365 Query 147187 ---AGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAG--GACGGTCGCTTCTT 147241 || || ||| ||| || || ||| ||| || |||||||| |||| | || Sbjct 1153364 GTAAGGGCGGCATGGTAGATAGTCTCGAAGATCTGCTTGTTTAGCTGACGAGC-CTCAGG 1153306 Query 147242 CGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGC 147301 || |||| ||||||| || ||| || || ||||| || | |||||| | ||| | | Sbjct 1153305 CGA-CTCGAAAGGCATGCGTAGAGCCAAGAATGCATCTGCAAGACCCTGAACACCAAGAC 1153247 Query 147302 CGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCG 147359 | || |||||||| ||||||| | || || || | ||| |||| |||| Sbjct 1153246 CAATGGGTCGATGACGCATGTTGCTGT--TGCGTGCCTCCTGAACGGGGTAGTAGTTGAC 1153189 Query 147360 ATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAA 147419 ||| || || ||| ||||||||||| | ||| || | | | ||| |||| || Sbjct 1153188 ATCGATGATACGGTTCAGGTTACGCACGATAACCCGTGTAACTTCGTGGAGCTTCTTAAA 1153129 Query 147420 ATCATA--AGTCC-CGTCTTCGACA-CGTACGCATTGGTTCACGGCGATAGACGCCAGAT 147475 | || || || |||| | || |||| || || || || | || ||||| | Sbjct 1153128 GTTGTAGCAGCCCTCGTCGTAATCAACGTAGGCG--GG--CAGAGCCAGCGAAGCCAGGT 1153073 Query 147476 TGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGC 147535 |||| || || ||| |||| ||| ||| | | || || | ||| || ||| || Sbjct 1153072 TGCAAACAGCAACCTCATCGGGAGCGCAGTATTCAATAATCTCAGTGCAAAGATTGGAGC 1153013 Query 147536 ATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCA 147595 || |||| || | ||| ||||| || || ||||| || || ||| | |||| Sbjct 1153012 TGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAAAGCA 1152953 Query 147596 TGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTC 147655 || | || || |||||| ||| | ||| | || | ||| | ||| || | Sbjct 1152952 TGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGAATCGAGTACCACAGCTTCTGGGCAC 1152893 Query 147656 GCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGT 147715 | | | ||| ||| || ||||| || || ||| |||||| | ||||||||| | Sbjct 1152892 GGATCGTCTGACGACCACGACCCTCCTTCTCATACTTCTCGTAAAGGGCCTCAAACTCCT 1152833 Query 147716 CGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGT 147775 |||||||||| || || ||||| || |||| | || ||||| || | ||| | |||| Sbjct 1152832 CGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGT 1152773 Query 147776 CCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGC 147818 | | |||||| ||| || ||||| || | ||| || || Sbjct 1152772 TCTTCTCAACGCGCTTCATGAAGAGATCAGGGATCCATAGAGC 1152730 >seq272 Length=795643 Score = 93.3 bits (102), Expect = 4e-14 Identities = 238/358 (66%), Gaps = 7/358 (2%) Strand=Plus/Plus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || || || ||| |||||| ||||||| || ||||| || || ||||| ||| Sbjct 63226 ATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCCCGTGACGAGGGTCTTCACACTGAC 63285 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCCTG 47033 || || || || | | || | | | | || | || | ||| || | Sbjct 63286 TTCGCTTGCCT--ACTCCACTCC-CACCTAAACAATCGCGCAAGCAAGGAGGTCATTGAG 63342 Query 47034 AGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTC 47093 ||||| | | || || || | ||| || |||||||| || || | ||| || || | Sbjct 63343 AGCATCATCACTGACGCCGTCACCATTGAGAAGGAGTTCTTGACCGAGGCTCTTCCTTGC 63402 Query 47094 GCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGT 47153 ||| |||||||||||||||| | |||| | ||||| |||||||| || || ||| Sbjct 63403 GCCATGCTGGGCATGAACGCCAACCTTATGAAGCAGTATATCGAGTTTGTTGCCGACCGT 63462 Query 47154 CTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCG--TAATCCGTTTGAGTTTA 47211 || |||| ||||| | ||| | | || ||| ||| || || || || | Sbjct 63463 CTTCTGGTTGCTCTCGG--TAACGACAAGGTGTACAAGTCGACTAACCCCTTCGACTTCA 63520 Query 47212 TGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 || | |||||||| || | ||||| ||||| || |||||||| || ||||| || || Sbjct 63521 TGGAGAACATTTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGTGACTA 63578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608370121000