Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq272 129 8e-24 >seq272 Length=795643 Score = 129 bits (142), Expect = 8e-24 Identities = 211/300 (70%), Gaps = 13/300 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||| ||| || || || ||||| || ||||| |||| | Sbjct 62684 GATCTGGCAAATGTAC-AAGAAGCACGAAGCTTCTTTCTGGACTGCTGAGGAAATCGATC 62742 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| | | ||| ||| ||||||||| | ||| Sbjct 62743 TGTCCAAGGATCTCCACG----ACTGGCACACCCGCATGAACGATGACGAGCGCTACTTC 62798 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 || ||||| || ||||| || ||| ||| |||||||| || |||||||||| Sbjct 62799 GTCTCTCACGTTCTTGCCTTCTT-CGCTGCCTCTGATGGCATTGTCAATGAGAACCTGGT 62857 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | ||||| | |||||||| | || ||||| || | || ||||| |||||||| Sbjct 62858 TGAGCGCTTCAGCGCTGAGGTCCAGATTCCTGAGGCTCGGTGCTTCTACGGATTCCAGAT 62917 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || |||||||| ||||| |||||||| ||| ||||||| Sbjct 62918 CATGATGGAGAACATCCACTCGGAGACCTACTCCCTCCTCATCGACACATACATCAAGGA 62977 Score = 86.0 bits (94), Expect = 9e-11 Identities = 180/261 (69%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| || |||||| || ||||| ||||| | | |||| | || || | ||| Sbjct 63346 ATCATCACTGACGCCGTCACCATTGAGAAGGAGTTCTTGACCGAGGCTCTTCC--TTGCG 63403 Query 1456583 C--TCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 | | | ||||||||||||| | || ||| ||||| || || ||| || |||||||| Sbjct 63404 CCATGCTGGGCATGAACGCCAAC-CTTATGAAGCAGTATATCGAGTTT-GTTGCCGACCG 63461 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 || || | || ||||| || | ||| ||| | || | ||||| ||| | | Sbjct 63462 TCTTCTGGTTGCTCTCGGTAACG-ACAAGGTGTACAAGTCGACTAACCCCTTCGACTTCA 63520 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACG 1456759 ||||| || || || | |||||||||||||| |||||| ||||| || || ||| Sbjct 63521 TGGAGAACATTTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGTGACTACC 63580 Query 1456760 CCAAGGCCGGCGTCACCGCCA 1456780 |||||||| |||| |||| Sbjct 63581 AGAAGGCCGGTGTCATGGCCA 63601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177765385376950