Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq72 183 4e-41 seq272 91.5 2e-13 >seq72 Length=1307737 Score = 183 bits (202), Expect = 4e-41 Identities = 455/683 (67%), Gaps = 12/683 (2%) Strand=Plus/Minus Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA-TATTGTATTATCTCTGTACA 69335 || || || || ||||| || ||||||| | | ||| |||| || ||||| || || Sbjct 1153082 GAAGCCAGGTTGCAAACAGCAACCTCATCGGGAGC-GCAGTATTCAATAATCTCAGTGCA 1153024 Query 69336 TAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTC 69395 ||||| | |||||| ||||| || | ||| || ||||| ||| || || || Sbjct 1153023 AAGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATC 1152964 Query 69396 CTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAAC 69455 ||||||||| || || || ||||||| || | || | ||||| ||| || | ||| | Sbjct 1152963 CTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGAATCGAGTACCACAG 1152904 Query 69456 GACCCTAGCATTTATTACGGTCTTGTAAC---GCTTCTCTTTTTCATA-TTGT-GTATAT 69510 | ||| || |||| || | ||| || ||||| || | ||| | Sbjct 1152903 CTTCTGGGCACGGATC---GTCTGACGACCACGACCCTCCTTCTCATACTTCTCGTAAAG 1152847 Query 69511 AGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATC 69570 ||| || || || || || | ||| ||| ||||| || || || || ||||| Sbjct 1152846 GGCC--TCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATG 1152789 Query 69571 AATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCT 69630 | | ||| || | | || ||| || ||||| || ||||| || ||||| |||||| Sbjct 1152788 AGAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATGAAGAGATCAGGGATCCATAGAGCT 1152729 Query 69631 ATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAAC 69690 | || || |||| | | | ||||| ||||| ||| ||| |||||| || ||| Sbjct 1152728 AGGAACAGGTCTCGTGCACGGATCTCTTCCTTTCCGTGATTCTTTCGAAGATCCAGGAAC 1152669 Query 69691 TCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTT 69750 || | | |||||| ||||| || || ||||| || || | | | || || || || || Sbjct 1152668 TCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGGCGCTTGTTG 1152609 Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || |||||||| | |||||||||||||| || | |||| |||||| || || || ||| Sbjct 1152608 CCACCCTGATCAACATATCTGGCAGTGTTGTTGAACACTCGCAGCATGGGGATGATTCCA 1152549 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | || || ||||| | ||| || ||| | || ||||| || Sbjct 1152548 TTGGATGTGCCGTTGGTTCCGGCAATGTACGAGCCTGTAGCACGAATGCGGTGAACGTTG 1152489 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 ||||| || ||||||||||| || ||||| | ||||| || | || || || ||| Sbjct 1152488 AGACCGATACCTCCTGCCATCTTTGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATA 1152429 Query 69931 CCCTCTATGCTATCATCTATCAT 69953 || || ||||| ||||| |||| Sbjct 1152428 CCGTCAATGCTGTCATCCTTCAT 1152406 >seq272 Length=795643 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 || ||| ||||||||| || || ||||| || | || | ||||| || || || Sbjct 63297 TAGGCAAGCGAAGTCAGTGTGAAGACCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGT 63238 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732 ||| |||||||| ||||||||||| || | ||| || |||| ||| |||| || || Sbjct 63237 GAGACCAGGCATCAGACCACGCTTCTTCAACCAGAAGATGGAAGCGAAAGCACCGCTGAA 63178 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||||||||| || || || || || |||||||| Sbjct 63177 GAAGATGCCCTCAACGGCAGCGAAGGCAACAAG 63145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686904721479000